YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCP17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.51
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKECYYLSW ILKFHLLLVL IQLVDSGSTI RFLPGFQGPL PFELETGYIG VGEAEKDQMF  60
   61 YYFIKSESNP EKDPLLLWLS GGPFCSSFTA LIYENGPIAF KAEEYNGSIP SLVSTTYAWT 120
  121 KVASILYLDQ PVGTGFSYSR NPLADIPSDT GVAKPVNEFL HKWLDKHPEF LSNPLYVAGN 180
  181 SYSGIVIPTI VQEISNGNHL DSKPQINLQG FVLGNPATDT DIDLNSRIPF AHGKALISDE 240
  241 HYESLKRSCQ GNYISVNPRN TKCLKLLEDF KKCVSGISEE YILKPDCMWL YSCMANLHSL 300
  301 SEYWANEKSV RKALLVNEGT VRKWIRCNTE IAYNKDIRSS VPYHKYISIE GYRSLVFSGD 360
  361 HDMLVPFLGT QAWIRSLNYS IVDDWRPWMV QNQVAGYTRT YANKMTFATV KGGGHTSEYK 420
  421 PVETYIMIKR WLSGQPL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.44
Transmembrane Helix	11	27	0.43
Non-Cytoplasmic	28	437	0.96