YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB20G_ARATH
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLFGILSP AKRVNGDGLP LFYNIHKSVE LQRCHRDTAR VSVTLAELLM SVEDEGDDQS  60
   61 RAMDIAVASN FWSSVPSSRV PSSSPFVLSF KDLTYSVKIK KKFKPFPCCG NSPFDGNDME 120
  121 MNTKVLLNGI SGEAREGEMM AVLGASGSGK STLIDALANR ISKESLRGDI TLNGEVLESS 180
  181 LHKVISAYVM QDDLLFPMLT VEETLMFSAE FRLPSSLSKK KKKARVQALI DQLGLRNAAK 240
  241 TVIGDEGHRG VSGGERRRVS IGTDIIHDPI ILFLDEPTSG LDSTSAYMVV KVLQRIAQSG 300
  301 SIVIMSIHQP SYRILGLLDK LIFLSRGNTV YSGSPTHLPQ FFSEFGHPIP ENENKPEFAL 360
  361 DLIRELEDSP EGTKSLVEFH KQWRAKQTSS QSRRNTNVSL KDAISASISR GKLVSGATNL 420
  421 RSSFQTFANP FWTEMLVIGK RSILNSRRQP ELFGIRLGAV LVTGMILATI FWKLDNSPRG 480
  481 IQERLGFFAF AMSTTFYTCA EAIPVFLQER YIFMRETAYN AYRRSSYVLA HTIISIPALI 540
  541 ILSAAFAAST FSAVGLAGGS EGFLFFFFTI LTAFWAGSSF VTFLSGVVSH VMIGFTVVVA 600
  601 ILAYFLLFSG FFISRDRIPL YWIWFHYLSL VKYPYEGVLQ NEFEDPTKCF VRGIQMFDNS 660
  661 PLGQVPTAVK ISLLKSMSGV LGINVTAETC VTTGIDILKQ QGITEISKWN CLWITVAWGF 720
  721 FFRVLFYFTL LIGSKNKRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle