YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.86
Transmembrane Helix	96	117	0.87
Non-Cytoplasmic	118	138	0.80
Transmembrane Helix	139	161	0.77
Cytoplasmic	162	181	0.95
Transmembrane Helix	182	204	0.91
Non-Cytoplasmic	205	210	0.80
Transmembrane Helix	211	231	0.92
Cytoplasmic	232	328	0.97
Transmembrane Helix	329	350	0.84
Non-Cytoplasmic	351	369	0.86
Transmembrane Helix	370	394	0.79
Cytoplasmic	395	410	0.91
Transmembrane Helix	411	434	0.85
Non-Cytoplasmic	435	457	0.90
Transmembrane Helix	458	479	0.87
Cytoplasmic	480	489	0.85
Transmembrane Helix	490	514	0.81
Non-Cytoplasmic	515	536	0.90
Transmembrane Helix	537	556	0.96
Cytoplasmic	557	570	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKDVYTQD GTVDIHKNPA NKEKTGNWKA CRFILGNECC ERLAYYGMGT NLVNYLESRL  60
   61 NQGNATAANN VTNWSGTCYI TPLIGAFIAD AYLGRYWTIA TFVFIYVSGM TLLTLSASVP 120
  121 GLKPGNCNAD TCHPNSSQTA VFFVALYMIA LGTGGIKPCV SSFGADQFDE NDENEKIKKS 180
  181 SFFNWFYFSI NVGALIAATV LVWIQMNVGW GWGFGVPTVA MVIAVCFFFF GSRFYRLQRP 240
  241 GGSPLTRIFQ VIVAAFRKIS VKVPEDKSLL FETADDESNI KGSRKLVHTD NLKFFDKAAV 300
  301 ESQSDSIKDG EVNPWRLCSV TQVEELKSII TLLPVWATGI VFATVYSQMS TMFVLQGNTM 360
  361 DQHMGKNFEI PSASLSLFDT VSVLFWTPVY DQFIIPLARK FTRNERGFTQ LQRMGIGLVV 420
  421 SIFAMITAGV LEVVRLDYVK THNAYDQKQI HMSIFWQIPQ YLLIGCAEVF TFIGQLEFFY 480
  481 DQAPDAMRSL CSALSLTTVA LGNYLSTVLV TVVMKITKKN GKPGWIPDNL NRGHLDYFFY 540
  541 LLATLSFLNF LVYLWISKRY KYKKAVGRAH