YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	226	0.99
Transmembrane Helix	227	250	0.93
Cytoplasmic	251	292	0.97
Transmembrane Helix	293	319	0.81
Non-Cytoplasmic	320	325	0.83
Transmembrane Helix	326	350	0.86
Cytoplasmic	351	361	0.84
Transmembrane Helix	362	385	0.89
Non-Cytoplasmic	386	394	0.64
Transmembrane Helix	395	415	0.91
Cytoplasmic	416	452	0.85
Transmembrane Helix	453	473	0.83
Non-Cytoplasmic	474	482	0.82
Transmembrane Helix	483	508	0.88
Cytoplasmic	509	516	0.92
Transmembrane Helix	517	539	0.90
Non-Cytoplasmic	540	554	0.87
Transmembrane Helix	555	580	0.87
Cytoplasmic	581	592	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPTTLLLF IGALIFSGAG TVRSDASDHR YKDGDSVPLY ANKVGPFHNP SETYRYFDLP  60
   61 FCIPEGVKDK KEALGEVLNG DRLVSAPYKL NFRDEKDSEV YCKKKLSREE VEHFRRAVEK 120
  121 DYYFQMYYDD LPIWGFIGKV DKESKSDPSE FKYFLYKHIQ FEILYNKDRV IEINARMDPH 180
  181 SLVDLTEDKE VDAEFMYTVK WKETETSFEK RMDKYAMSSS LPHHLEIHWF SIINSCVTVL 240
  241 LLTGFLATIL MRVLKNDFMK YAQDEEAADD QEETGWKYIH GDVFRFPKNK SLFAASLGSG 300
  301 TQLFTLTIFI FMLSLVGVFY PYNRGALFTA LVVIYALTSG IAGYTASSFY CQLEGKNWVR 360
  361 NLLLTGGLFC GPLFLTFCFL NTVAIAYSAT AALPFGTIIV IVLIWTLVTS PLLVLGGIAG 420
  421 KNSKAEFQAP VRTTKYPREI PPLPWYRSAV PQMAMAGFLP FSAIYIELYY IFASVWGHRI 480
  481 YTIYSILFIV FIILLIVTAF ITVALTYFQL AAEDHEWWWR SFLCGGSTGL FIYAYCLYYY 540
  541 YARSDMSGFM QTSFFFGYMA CICYGFFLML GTVGFRAALL FVRHIYRSIK CE