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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2245119, gi|7...
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDLLIKSSLR YDGTLKSDCN NSHHGHMETP DEEAKIFNWL EVLWNRGFRH DNPLVRCTVM  60
   61 ESFFGIEWRR YKTCTQSMSQ TFVLGPFIEG LNDPTHHKDF GLKGIYTSRT IEGAAQYVSA 120
  121 YTSCLNPRNR VGFLINLASL AKKQSFCRAG FMALVQCIVS TAYVVGGYGD KEMGHLEDKF 180
  181 SGTAQESSCG HLSQDDMTHI LDVLKFVAES SRQHFNHKYR IRASLTILNT LKFLLLIVLF 240
  241 HFLVYQKVLE TAASVVNPCN VPLGTLLQFV SAIPREFTDH DGLLRKMMLE WLQGCNRKTS 300
  301 NSLCTDGTRL LASLYEYLKG FTSDNVESFD DEDLEAWDSQ TKRWARVFFL MINKEEHLTD 360
  361 IIMFVQNNGL SFFQEKNHLK RAPAKFLIFI LSMLLELQNM QDGISELSSS VKSKSGIGSD 420
  421 EQTGKQIVVD ASSIKKKFAV VLLSILKELI PFADSSCSIF WSHTTVENGA LPGSVIGKLG 480
  481 GPSQRRLSVP TTTAVLEAVL SVKTIGLISS YCAQFTSGVG ELKLALAFFW KFTQHTISSQ 540
  541 ICNSEAAAEI YLAAFEALAS VLNAFVSLCS AGAFNLLEND STLLSMVDGE FWLQVSVPAF 600
  601 VRNINHLLTA GVLVRSRRAV LLSWKWLCVE SLLSVMHILD ARRIPEDRKS FFSDDTVKSI 660
  661 FQDIVESLEN AGEGSALPML KSVRLALGIL ASGKSSLDGF SGVDTQTMWQ LVKSCWILHI 720
  721 SCKKRRVAPI AALLSSVLHS SLFSNKDMHI TEDEHGPLKW FVEKVLEEGQ KSPRTIRLAA 780
  781 LHLSGLWLMY PRTIKYYIKE LRLLTLYGSV AFDEDFEAEL SDNNDARTEV SLLAKSPDPE 840
  841 LTELFINTEL YARVSVAGLF QKLANLAYMV EPASQNQDCQ DALVAGKLFL LELLDAAVHD 900
  901 KDLAKELYKK YSAIHRRKIR AWQMICIMSR FVCNDIVGQV MDSVHICLHV SLQEQTERNN 960
  961 LPAVRQYLET FAINIYLKFP ALVKEQLVPI LKNYDSKAQV NLRKTKMIVF ANVILHAEKI1020
 1021 AQQTHLRELL PPILPLLTSH HHSLRGFAQL LVHRVLFRLF PPVESTSSHT ISLEKLSFEN1080
 1081 LKSYLDKNPD CSRLRASMEG FLDAYDPSTS ATPAGVFVNR VEESEFECVP TCLMDNVLSF1140
 1141 LNDVREDLRA SMAKDVVTIK NEGFKIDEEP KRRLIMSTTD EERLSEPSSL DFQRKITLSK1200
 1201 HEKQDASSTS VLRNGETYKR LFEMEKEDEL VTQLLRSRSM EVERLKSGRQ SLILVASLVD1260
 1261 RIPNLAGLAR TCEVFKASSL AVADASIIHD KQFQLISVTA EKWVPIMEVP VNSLKLFLEK1320
 1321 KKREGFSILG LEQTANSVSL DKYQFPKKTR KQIPFKSSAS GKWYLLIQAH HGIIDVSKST1380
 1381 ESQSVFPSFS NCFRSQVPLI HLASWNLTTL SVVFISSPST ATFLAVAVSS FLTAGVDCGG1440
 1441 SLTITSTGSG ASTETAAVGE VDPLSEEARV TERREKRLLE RRENENLGMK LGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle