YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOR4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.53
Transmembrane Helix	38	59	0.82
Non-Cytoplasmic	60	68	0.46
Transmembrane Helix	69	91	0.58
Cytoplasmic	92	93	0.29
Transmembrane Helix	94	112	0.67
Non-Cytoplasmic	113	124	0.60
Transmembrane Helix	125	148	0.89
Cytoplasmic	149	158	0.54
Transmembrane Helix	159	177	0.90
Non-Cytoplasmic	178	200	0.69
Transmembrane Helix	201	221	0.93
Cytoplasmic	222	238	0.61
Transmembrane Helix	239	258	0.85
Non-Cytoplasmic	259	293	0.63
Transmembrane Helix	294	315	0.90
Cytoplasmic	316	335	0.58
Transmembrane Helix	336	357	0.86
Non-Cytoplasmic	358	472	0.47
Transmembrane Helix	473	487	0.66
Cytoplasmic	488	488	0.03
Transmembrane Helix	489	503	0.66
Non-Cytoplasmic	504	556	0.50
Transmembrane Helix	557	586	0.77
Cytoplasmic	587	683	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERVDSSK RLFRGIVADL RGRALCYKED WVAGLRSGFG ILAPTTYIFF ASALPVIAFG  60
   61 EQLSRDTEGA LSTVETLAST ALCGVIHSIL GGQPLLILGV AEPTVLMYVY LYNFAIGRPE 120
  121 LGKQLYLAWA AWVCVWTALL LFVMAILNTA DIINRFTRVA GELFGMLISV LFIQQAIKGM 180
  181 VSEFGMPKDE DSKLEKYKFE WLYTNGLLGL IFTFGLLYTA LKSRKARSWR YGTGWYRSFI 240
  241 ADYGVPLMVV VWTALSFSTP SKLPSGVPRR LFSPLPWDSP SLSHWTVIKD MGKVSPGYIF 300
  301 AAFIPALMIA GLYFFDHSVA SQLAQQKEFN LKKPSAYHYD ILLLGFMTLI CGLLGLPPSN 360
  361 GVLPQSPMHT KSLAVLKRQL IRRKMVKTAK ESIRKRETSS QVYENMQEVF IEMDKSPLAQ 420
  421 TDPSVIIELQ DLKEAVMKSN DEEREGDEES GFDPEKHLDA YLPVRVNEQR VSNLLQSLLV 480
  481 AGAVLAMPAI KLIPTSILWG YFAYMAIDSL PGNQFFERLT LLFVPTSRRF KVLEGAHASF 540
  541 VEKVPYKSMA AFTLLQIFYF GLCYGVTWIP VAGIMFPVPF FLLIAIRQYI LPKLFNPAHL 600
  601 RELDAAEYEE IPGTPRNPLE LSFRSNDSKR GVQEGDAEIL DELTTSRGEL KVRTLNLNED 660
  661 KGNQIYPKEK VKAGDGDMST TRE