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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMT1_ARATH
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGRSEGGKK KPVIVLLCVA SVVLVFVYLF FGSSNHKAIE YGRKLGLGGD DDDSTKKDDT  60
   61 SSSFYVEDVV GNGFTPRSFP VCDDRHSELI PCLDRNLIYQ MRLKLDLSLM EHYERHCPPP 120
  121 ERRFNCLIPP PPGYKIPIKW PKSRDEVWKV NIPHTHLAHE KSDQNWMVVK GEKINFPGGG 180
  181 THFHYGADKY IASMANMLNF PNNVLNNGGR LRTFLDVGCG VASFGGYLLA SEIMTMSLAP 240
  241 NDVHQNQIQF ALERGIPAYL GVLGTKRLPY PSRSFELAHC SRCRIDWLQR DGILLLELDR 300
  301 VLRPGGYFAY SSPEAYAQDE EDLRIWREMS ALVGRMCWTI AAKRNQTVIW QKPLTNDCYL 360
  361 GREPGTQPPL CNSDSDPDAV YGVNMEACIT QYSDHDHKTK GSGLAPWPAR LTSPPPRLAD 420
  421 FGYSTDIFEK DTETWRQRVD TYWDLLSPKI QSDTVRNIMD MKASMGSFAA ALKEKDVWVM 480
  481 NVVPEDGPNT LKLIYDRGLM GAVHSWCEAF STYPRTYDLL HAWDIISDIK KRGCSAEDLL 540
  541 LEMDRILRPS GFILIRDKQS VVDLVKKYLK ALHWEAVETK TASESDQDSD NVILIVQKKL 600
  601 WLTSESLRDL E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle