YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778653
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTRNVASS PIECVHLQTK PTTTLVRSFF FFLFNSQTIS SFIIFYLFLC SFFWFCQSPN  60
   61 LTNPSPPPLS VAPLRGDANS PPPESSSSPA TKSSLMISSR DPNALFSGGG ISFLAGVRTV 120
  121 KFSYGYSSLK GKRATMEDYF ETRISDVNGQ MVAFFGVFDG HGGARTAEYL KNNLFKNLVS 180
  181 HDDFISDTKK AIGNNETKFE CSSSFFHGIC VFETLNFDSA VEVFKQTDEE YLIEEAGQPK 240
  241 NAGSTAATAF LIGDKLIVAN VGDSRVVASR NGSAVPLSDD HKPDRSDERQ RIEDAGGFII 300
  301 WAVITWNTPG TWRVGGILAV SRAFGDKQLK PYVIAEPEIQ VLRCDGLWNV LSNKDAVAIV 360
  361 RDISDAETAA RKLVQEGYAR GSCDNITCIV VRFEVS

Type	Start	End	Confidence
Cytoplasmic	1	30	0.91
Transmembrane Helix	31	55	0.84
Non-Cytoplasmic	56	396	0.82