YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GCL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVDFVTE QGRCGDDGNG AGETVKNGEI DHLLSEPSAP TISLPTESFL RAATLLKNQV  60
   61 VEATWKGGVE ALASGSGPVL DPTVYTGLLG TAFTCLKSYE VTRNHQDLLT CAEIIDTCAN 120
  121 VARATTRHVT FLCGRGGVCT LGAIVANYRG DQSKRDFFLG LFLELAEERE LPAGPEEGGF 180
  181 GMSYDLLYGR AGFLWAALFL NRYLGQGTVP DHLLSPIVAA ILAGGRVGAA DHEACPLLYR 240
  241 FHGTRFWGAA NGLAGILYVL LHFPLSEEDV KDVQGTLRYM MSNRFPNSGN YPCSEGNPRD 300
  301 KLVQWAHGAT GMAITLAKAS QVFPKERDFR EAAIEAGEVV WKSGLVKKVG LADGVAGNAY 360
  361 AFLSLYRLTG DVVYEERAKA FASYLCRDAI ELVNMTSQET EHDYSLFRGL AGPVCLWFDL 420
  421 VSPVDSKFPG YEI

Type	Start	End	Confidence
Cytoplasmic	1	185	0.56
Transmembrane Helix	186	200	0.45
Non-Cytoplasmic	201	211	0.64
Transmembrane Helix	212	230	0.47
Cytoplasmic	231	242	0.49
Transmembrane Helix	243	262	0.56
Non-Cytoplasmic	263	433	0.83