YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EGY3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.54
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	270	0.66
Transmembrane Helix	271	295	0.90
Cytoplasmic	296	303	0.62
Transmembrane Helix	304	326	0.79
Non-Cytoplasmic	327	336	0.46
Transmembrane Helix	337	355	0.47
Cytoplasmic	356	371	0.79
Transmembrane Helix	372	392	0.86
Non-Cytoplasmic	393	447	0.90
Transmembrane Helix	448	466	0.93
Cytoplasmic	467	485	0.80
Transmembrane Helix	486	511	0.88
Non-Cytoplasmic	512	535	0.86
Transmembrane Helix	536	559	0.86
Cytoplasmic	560	573	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLFVSTPS SSLTLKSCHS LHLRRFDRAE FSNFGKASVN QTTRSRHSLR CSAEDDRVRE  60
   61 PVNEAPSPVA LAEEQKEDHD NNNAPPSPES SEEEEEKKSK QQEMDWKTDE EFKKFMGNPS 120
  121 IEAAIKLEKT RTDRKLKELN KESNSENPII GIYNSLARDS LTKEKERLEK AEETFKALDL 180
  181 NKLKSCFGFD TFFATDVRRF GDGGIFIGNL RKPIDEVTPK LEAKLSEAAG RDVVVWFMEE 240
  241 RSNEITKQVC MVQPKAEIDL QFESTRLSTP WGYVSAIALC VTTFGTIALM SGFFLKPDAT 300
  301 FDDYIANVVP LFGGFLSILG VSEIATRVTA ARHGVKLSPS FLVPSNWTGC LGVMNNYESL 360
  361 LPNKKALFDI PVARTASAYL TSLLLAAAAF ISDGSFNGGD NALYIRPQFF DNNPLLSFVQ 420
  421 FVVGPYADDL GNVLPNAVEG VGVPVDPLAF AGLLGMVVTS LNLLPCGRLE GGRIAQAMFG 480
  481 RSTAAILSFT TSLLLGIGGL SGSVLCLAWG LFATFFRGGE ETPAKDEITP VGDDRFAWGI 540
  541 VLGLICFLTL FPNSGGTFST SFFNGPFFRG DDF