YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANTL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.94
Transmembrane Helix	39	59	0.92
Non-Cytoplasmic	60	64	0.81
Transmembrane Helix	65	87	0.91
Cytoplasmic	88	97	0.88
Transmembrane Helix	98	120	0.66
Non-Cytoplasmic	121	124	0.54
Transmembrane Helix	125	147	0.83
Cytoplasmic	148	194	0.54
Transmembrane Helix	195	216	0.61
Non-Cytoplasmic	217	235	0.73
Transmembrane Helix	236	256	0.83
Cytoplasmic	257	270	0.85
Transmembrane Helix	271	294	0.90
Non-Cytoplasmic	295	305	0.83
Transmembrane Helix	306	329	0.86
Cytoplasmic	330	348	0.87
Transmembrane Helix	349	367	0.96
Non-Cytoplasmic	368	374	0.71
Transmembrane Helix	375	397	0.92
Cytoplasmic	398	405	0.85
Transmembrane Helix	406	428	0.84
Non-Cytoplasmic	429	436	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK  60
   61 RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS KIGSFGDLGF AVCGSLGRIV 120
  121 VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC 180
  181 FPFQLGLNSI KTLTHLAPLS IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY 240
  241 GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD 300
  301 IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT 360
  361 LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE MGWLQWSSDT AIVVLGVVLA 420
  421 VSGTWSSLSE IFSVKV