YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.82
Transmembrane Helix	38	60	0.83
Non-Cytoplasmic	61	65	0.61
Transmembrane Helix	66	88	0.85
Cytoplasmic	89	155	0.73
Transmembrane Helix	156	175	0.72
Non-Cytoplasmic	176	180	0.60
Transmembrane Helix	181	201	0.82
Cytoplasmic	202	267	0.71
Transmembrane Helix	268	290	0.93
Non-Cytoplasmic	291	305	0.78
Transmembrane Helix	306	328	0.88
Cytoplasmic	329	352	0.70
Transmembrane Helix	353	373	0.78
Non-Cytoplasmic	374	378	0.57
Transmembrane Helix	379	401	0.87
Cytoplasmic	402	409	0.88
Transmembrane Helix	410	432	0.91
Non-Cytoplasmic	433	446	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAQAPHDDH QDDEKLAAAR QKEIEDWLPI TSSRNAKWWY SAFHNVTAMV GAGVLGLPYA  60
   61 MSQLGWGPGI AVLVLSWVIT LYTLWQMVEM HEMVPGKRFD RYHELGQHAF GEKLGLYIVV 120
  121 PQQLIVEIGV CIVYMVTGGK SLKKFHELVC DDCKPIKLTY FIMIFASVHF VLSHLPNFNS 180
  181 ISGVSLAAAV MSLSYSTIAW ASSASKGVQE DVQYGYKAKT TAGTVFNFFS GLGDVAFAYA 240
  241 GHNVVLEIQA TIPSTPEKPS KGPMWRGVIV AYIVVALCYF PVALVGYYIF GNGVEDNILM 300
  301 SLKKPAWLIA TANIFVVIHV IGSYQIYAMP VFDMMETLLV KKLNFRPTTT LRFFVRNFYV 360
  361 AATMFVGMTF PFFGGLLAFF GGFAFAPTTY FLPCVIWLAI YKPKKYSLSW WANWVCIVFG 420
  421 LFLMVLSPIG GLRTIVIQAK GYKFYS