YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4582448, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	137	0.97
Transmembrane Helix	138	156	0.94
Non-Cytoplasmic	157	193	0.92
Transmembrane Helix	194	216	0.83
Cytoplasmic	217	231	0.89
Transmembrane Helix	232	253	0.87
Non-Cytoplasmic	254	262	0.72
Transmembrane Helix	263	284	0.90
Cytoplasmic	285	290	0.90
Transmembrane Helix	291	309	0.94
Non-Cytoplasmic	310	325	0.86
Transmembrane Helix	326	347	0.92
Cytoplasmic	348	392	0.95
Transmembrane Helix	393	415	0.88
Non-Cytoplasmic	416	431	0.90
Transmembrane Helix	432	453	0.86
Cytoplasmic	454	489	0.94
Transmembrane Helix	490	510	0.88
Non-Cytoplasmic	511	515	0.78
Transmembrane Helix	516	534	0.91
Cytoplasmic	535	556	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFDLDNVFA GDPFLCSQPR KCLTTNLNMS RTRQGHSIQM NRRHLLMKER KSFSINYSDK  60
   61 FRDDSMSSEE MHTDALDVEI IPPDSQDIRN SQNSAVSNTL QDDRPKSFRN RFLDFVRISS 120
  121 VLNTAAERFF KSEIRRRLFV TAVLLVLSRV GYFIPLPGFD RRLIPQDYLS FVSGSVGECS 180
  181 HFGAEIKLSL FQLGLSPQII ASIIMQVLCH VLPSLVKLRK EGLDGHEKIK SYMCMVAIVF 240
  241 LRYSGSISGG LHFSSIFSFC SHCPHVMMTS SLLVCGAMTM TWLCDTISES GFGHGSSLII 300
  301 CVGILTGYTE TLHKMLNQIS GSFSNWLPYL LGLLGIFTVV TMFAVVVTEG CRKIKLQYYG 360
  361 FKLASASREG SPITEVEPYI PFNINPAGMQ PVLTTTYLLA FPSILASILG SPFLLNMKEI 420
  421 LNPESTVGAP PWVYYSIYAF FVFLFNIFDI ANLPKEIADY LNKMGARIPN IKPGKATIEY 480
  481 LTKIQASTRF WGGLLLSFLA TASTVLDHYL RSINQGFSIG FTSVLIIVGS IIELRRSYHA 540
  541 YNVMPSLSKA LKRYGV