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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RCH2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLHSLIFFS SSSSSLLFSF FFIFIFCFSL SDAEQNPEAS ILYSWLHSSS PTPSSLSLFN  60
   61 WNSIDNTPCN NWTFITCSSQ GFITDIDIES VPLQLSLPKN LPAFRSLQKL TISGANLTGT 120
  121 LPESLGDCLG LKVLDLSSNG LVGDIPWSLS KLRNLETLIL NSNQLTGKIP PDISKCSKLK 180
  181 SLILFDNLLT GSIPTELGKL SGLEVIRIGG NKEISGQIPS EIGDCSNLTV LGLAETSVSG 240
  241 NLPSSLGKLK KLETLSIYTT MISGEIPSDL GNCSELVDLF LYENSLSGSI PREIGQLTKL 300
  301 EQLFLWQNSL VGGIPEEIGN CSNLKMIDLS LNLLSGSIPS SIGRLSFLEE FMISDNKFSG 360
  361 SIPTTISNCS SLVQLQLDKN QISGLIPSEL GTLTKLTLFF AWSNQLEGSI PPGLADCTDL 420
  421 QALDLSRNSL TGTIPSGLFM LRNLTKLLLI SNSLSGFIPQ EIGNCSSLVR LRLGFNRITG 480
  481 EIPSGIGSLK KINFLDFSSN RLHGKVPDEI GSCSELQMID LSNNSLEGSL PNPVSSLSGL 540
  541 QVLDVSANQF SGKIPASLGR LVSLNKLILS KNLFSGSIPT SLGMCSGLQL LDLGSNELSG 600
  601 EIPSELGDIE NLEIALNLSS NRLTGKIPSK IASLNKLSIL DLSHNMLEGD LAPLANIENL 660
  661 VSLNISYNSF SGYLPDNKLF RQLSPQDLEG NKKLCSSTQD SCFLTYRKGN GLGDDGDASR 720
  721 TRKLRLTLAL LITLTVVLMI LGAVAVIRAR RNIDNERDSE LGETYKWQFT PFQKLNFSVD 780
  781 QIIRCLVEPN VIGKGCSGVV YRADVDNGEV IAVKKLWPAM VNGGHDEKTK NVRDSFSAEV 840
  841 KTLGTIRHKN IVRFLGCCWN RNTRLLMYDY MPNGSLGSLL HERRGSSLDW DLRYRILLGA 900
  901 AQGLAYLHHD CLPPIVHRDI KANNILIGLD FEPYIADFGL AKLVDEGDIG RCSNTVAGSY 960
  961 GYIAPEYGYS MKITEKSDVY SYGVVVLEVL TGKQPIDPTV PEGIHLVDWV RQNRGSLEVL1020
 1021 DSTLRSRTEA EADEMMQVLG TALLCVNSSP DERPTMKDVA AMLKEIKQER EEYAKVDLLL1080
 1081 KKSPPPTTTM QEECRKNEMM MIPAAAASSS KEMRREERLL KSNNTSFSAS SLLYSSSSSI1140
 1141 E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle