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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CCX5_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELISSSTIG NSALCLTLIS ILIFFFLTTT TIPTFPDHPL RSLLDDSQIT TNSSSIVNPK  60
   61 SSCVSSRSHD NGGVINYFSL HYCIFNENLF FSIPILSLLI LLHFYILIKT AQTHFSTVTT 120
  121 KLADRLNLSP SMAAVTLLAL GNGAPDVFAS VAALRGGQYR TGFGAILSAG TFVSAFVVGF 180
  181 VAIYAAPFPV DAASFVRDVL FYLIAALFLF YVYLSGEIFV WQAIGFVGFY IFFVGFVFWM 240
  241 DFGTNVEKGK SISEEEKDLL RLQDCEIAAG SLGSYKAEKE HQFSGIFRLY GTISRMWETP 300
  301 VSVLLNLTIP KPSPSEWSRF YRSANIVFCP FALLYTCNSF VQLNHPISFL FPNTHLPLWL 360
  361 VVLFMTSSLA FLHFTVEKQP PKTEQLPVIV VAFIMSVFWI STIAGELLNC LAALGTLLKL 420
  421 PPALLGLTVL AWGNSVGDLV ADVAVAKAGR PAMAMAGCFA GPMFNMLVGL GSALVMQTAN 480
  481 VYPDAYKLGF HVGIVIAFVF LLLSLMGSLL VITWSRFRVP RFWGICLVGL YVAFTFVSLI 540
  541 IASVST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle