YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCX5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	32	0.86
Non-Cytoplasmic	33	88	0.94
Transmembrane Helix	89	107	0.95
Cytoplasmic	108	127	0.87
Transmembrane Helix	128	149	0.83
Non-Cytoplasmic	150	162	0.81
Transmembrane Helix	163	186	0.91
Cytoplasmic	187	194	0.84
Transmembrane Helix	195	214	0.91
Non-Cytoplasmic	215	219	0.76
Transmembrane Helix	220	242	0.89
Cytoplasmic	243	322	0.96
Transmembrane Helix	323	343	0.86
Non-Cytoplasmic	344	354	0.84
Transmembrane Helix	355	376	0.93
Cytoplasmic	377	385	0.93
Transmembrane Helix	386	405	0.91
Non-Cytoplasmic	406	419	0.62
Transmembrane Helix	420	441	0.80
Cytoplasmic	442	452	0.78
Transmembrane Helix	453	476	0.87
Non-Cytoplasmic	477	489	0.87
Transmembrane Helix	490	512	0.92
Cytoplasmic	513	521	0.82
Transmembrane Helix	522	544	0.92
Non-Cytoplasmic	545	546	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELISSSTIG NSALCLTLIS ILIFFFLTTT TIPTFPDHPL RSLLDDSQIT TNSSSIVNPK  60
   61 SSCVSSRSHD NGGVINYFSL HYCIFNENLF FSIPILSLLI LLHFYILIKT AQTHFSTVTT 120
  121 KLADRLNLSP SMAAVTLLAL GNGAPDVFAS VAALRGGQYR TGFGAILSAG TFVSAFVVGF 180
  181 VAIYAAPFPV DAASFVRDVL FYLIAALFLF YVYLSGEIFV WQAIGFVGFY IFFVGFVFWM 240
  241 DFGTNVEKGK SISEEEKDLL RLQDCEIAAG SLGSYKAEKE HQFSGIFRLY GTISRMWETP 300
  301 VSVLLNLTIP KPSPSEWSRF YRSANIVFCP FALLYTCNSF VQLNHPISFL FPNTHLPLWL 360
  361 VVLFMTSSLA FLHFTVEKQP PKTEQLPVIV VAFIMSVFWI STIAGELLNC LAALGTLLKL 420
  421 PPALLGLTVL AWGNSVGDLV ADVAVAKAGR PAMAMAGCFA GPMFNMLVGL GSALVMQTAN 480
  481 VYPDAYKLGF HVGIVIAFVF LLLSLMGSLL VITWSRFRVP RFWGICLVGL YVAFTFVSLI 540
  541 IASVST