YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP19_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.98
Transmembrane Helix	44	65	0.92
Non-Cytoplasmic	66	90	0.92
Transmembrane Helix	91	112	0.84
Cytoplasmic	113	127	0.86
Transmembrane Helix	128	148	0.90
Non-Cytoplasmic	149	153	0.84
Transmembrane Helix	154	174	0.94
Cytoplasmic	175	181	0.90
Transmembrane Helix	182	206	0.87
Non-Cytoplasmic	207	218	0.89
Transmembrane Helix	219	240	0.92
Cytoplasmic	241	253	0.87
Transmembrane Helix	254	276	0.89
Non-Cytoplasmic	277	295	0.92
Transmembrane Helix	296	319	0.86
Cytoplasmic	320	326	0.65
Transmembrane Helix	327	347	0.89
Non-Cytoplasmic	348	353	0.83
Transmembrane Helix	354	375	0.85
Cytoplasmic	376	392	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFHTKSPDR VTHEEEANIG VDNQPRETTS TSLNRSQIIK TRNWWICIFV CSCLVVAGRV  60
   61 LSTLLLNFYF IQTGRDVCDD PKQFKGTWLQ SMVQNAAFPF TAFLLLLWRS SFSTHSETSS 120
  121 SSSSFGKLFL LYISLGVLFA AYSQLYAIGR THCVFFLWIF TSQLIFTSIF TTIINKQKFN 180
  181 RWIILSMVLS GAATGLGITS SGGAYIPCEN EGSKMSNGAW CAFFGTVAFS LSLCIMQLGF 240
  241 QKVIPTTQSR VSAVILMQTN ASMIATLICL VGLFVSGEFK DIKEDFETFK KGKPLYVLSL 300
  301 IGLSLAWQVM SLGLVGLVCL ASSLFSNVVS FCSTPLVNIL LVLAFRFTDA DVKFFKEGAL 360
  361 VAGILGFASY VYSLYKSTKK KEIASQSQTT RV