YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15228085, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.87
Transmembrane Helix	41	61	0.77
Non-Cytoplasmic	62	71	0.68
Transmembrane Helix	72	92	0.84
Cytoplasmic	93	109	0.74
Transmembrane Helix	110	132	0.93
Non-Cytoplasmic	133	148	0.88
Transmembrane Helix	149	167	0.89
Cytoplasmic	168	180	0.75
Transmembrane Helix	181	205	0.89
Non-Cytoplasmic	206	211	0.76
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	290	0.61
Transmembrane Helix	291	314	0.77
Non-Cytoplasmic	315	331	0.44
Transmembrane Helix	332	355	0.88
Cytoplasmic	356	371	0.42
Transmembrane Helix	372	393	0.58
Non-Cytoplasmic	394	405	0.50
Transmembrane Helix	406	429	0.86
Cytoplasmic	430	435	0.49
Transmembrane Helix	436	458	0.92
Non-Cytoplasmic	459	483	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPLLLGDD QLITRNLKST PTWWMNFTAE LKNVSSMAAP MATVTVSQYL LPVISVMVAG  60
   61 HCGELQLSGV TLATAFANVS GFGIMYGLVG ALETLCGQAY GAKQYTKIGT YTFSAIVSNV 120
  121 PIVVLISILW FYMDKLFVSL GQDPDISKVA GSYAVCLIPA LLAQAVQQPL TRFLQTQGLV 180
  181 LPLLYCAITT LLFHIPVCLI LVYAFGLGSN GAALAIGLSY WFNVLILALY VRFSSACEKT 240
  241 RGFVSDDFVL SVKQFFQYGI PSAAMTTIEW SLFELLILSS GLLPNPKLET SVLSICLTTS 300
  301 SLHCVIPMGI GAAGSTRISN ELGAGNPEVA RLAVFAGIFL WFLEATICST LLFTCKNIFG 360
  361 YAFSNSKEVV DYVTELSSLL CLSFMVDGFS SVLDGVARGS GWQNIGAWAN VVAYYLLGAP 420
  421 VGFFLGFWGH MNGKGLWIGV IVGSTAQGII LAIVTACLSW EEQVNSNLKY IFGHLMNLFF 480
  481 TPY