YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.88
Transmembrane Helix	97	120	0.83
Non-Cytoplasmic	121	133	0.78
Transmembrane Helix	134	156	0.75
Cytoplasmic	157	182	0.89
Transmembrane Helix	183	204	0.94
Non-Cytoplasmic	205	212	0.74
Transmembrane Helix	213	235	0.87
Cytoplasmic	236	331	0.99
Transmembrane Helix	332	355	0.84
Non-Cytoplasmic	356	369	0.91
Transmembrane Helix	370	390	0.88
Cytoplasmic	391	410	0.88
Transmembrane Helix	411	434	0.87
Non-Cytoplasmic	435	457	0.90
Transmembrane Helix	458	479	0.86
Cytoplasmic	480	489	0.85
Transmembrane Helix	490	513	0.85
Non-Cytoplasmic	514	536	0.88
Transmembrane Helix	537	557	0.93
Cytoplasmic	558	570	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDDKDIYTK DGTLDIHKKP ANKNKTGTWK ACRFILGTEC CERLAYYGMS TNLINYLEKQ  60
   61 MNMENVSASK SVSNWSGTCY ATPLIGAFIA DAYLGRYWTI ASFVVIYIAG MTLLTISASV 120
  121 PGLTPTCSGE TCHATAGQTA ITFIALYLIA LGTGGIKPCV SSFGADQFDD TDEKEKESKS 180
  181 SFFNWFYFVI NVGAMIASSV LVWIQMNVGW GWGLGVPTVA MAIAVVFFFA GSNFYRLQKP 240
  241 GGSPLTRMLQ VIVASCRKSK VKIPEDESLL YENQDAESSI IGSRKLEHTK ILTFFDKAAV 300
  301 ETESDNKGAA KSSSWKLCTV TQVEELKALI RLLPIWATGI VFASVYSQMG TVFVLQGNTL 360
  361 DQHMGPNFKI PSASLSLFDT LSVLFWAPVY DKLIVPFARK YTGHERGFTQ LQRIGIGLVI 420
  421 SIFSMVSAGI LEVARLNYVQ THNLYNEETI PMTIFWQVPQ YFLVGCAEVF TFIGQLEFFY 480
  481 DQAPDAMRSL CSALSLTAIA FGNYLSTFLV TLVTKVTRSG GRPGWIAKNL NNGHLDYFFW 540
  541 LLAGLSFLNF LVYLWIAKWY TYKKTTGHAL