YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YUC5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENMFRLMGS EDSSDRRRCI WVNGPVIVGA GPSGLATAAC LREEGVPFVV LERADCIASL  60
   61 WQKRTYDRIK LHLPKKVCQL PKMPFPEDYP EYPTKRQFIE YLESYANKFE ITPQFNECVQ 120
  121 SARYDETSGL WRIKTTSSSS SGSEMEYICR WLVVATGENA EKVVPEIDGL TTEFEGEVIH 180
  181 SCEYKSGEKY RGKSVLVVGC GNSGMEVSLD LANHNANASM VVRSSVHVLP REILGKSSFE 240
  241 ISMMLMKWFP LWLVDKILLI LAWLILGNLT KYGLKRPTMG PMELKIVSGK TPVLDIGAME 300
  301 KIKSGEVEIV PGIKRFSRSH VELVDGQRLD LDAVVLATGY RSNVPSWLQE NDLFSKNGFP 360
  361 KSPFPNAWKG KSGLYAAGFT RKGLAGASAD AVNIAQDIGN VWREETKRQK MRTRVGHRRC 420
  421 ISVA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.80
Transmembrane Helix	20	41	0.69
Non-Cytoplasmic	42	424	0.74