YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX28_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.95
Transmembrane Helix	51	70	0.90
Non-Cytoplasmic	71	86	0.75
Transmembrane Helix	87	107	0.84
Cytoplasmic	108	125	0.77
Transmembrane Helix	126	144	0.95
Non-Cytoplasmic	145	161	0.77
Transmembrane Helix	162	180	0.94
Cytoplasmic	181	191	0.81
Transmembrane Helix	192	213	0.88
Non-Cytoplasmic	214	230	0.73
Transmembrane Helix	231	253	0.89
Cytoplasmic	254	263	0.86
Transmembrane Helix	264	282	0.80
Non-Cytoplasmic	283	303	0.75
Transmembrane Helix	304	325	0.71
Cytoplasmic	326	340	0.83
Transmembrane Helix	341	365	0.89
Non-Cytoplasmic	366	384	0.87
Transmembrane Helix	385	407	0.82
Cytoplasmic	408	414	0.69
Transmembrane Helix	415	438	0.85
Non-Cytoplasmic	439	444	0.79
Transmembrane Helix	445	465	0.94
Cytoplasmic	466	491	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGERDDEAEG ILEKAKIPLL KDQNVAEEEN GEIKKEIWLE TKKLWRIVGP AIFTRVTTNL  60
   61 IFVITQAFAG HLGELELAAI SIVNNVIIGF NYSLFIGMAT ALETLCGQAF GAKKYDMFGV 120
  121 YLQRSWIVLF LFSILLLPMY IFATPILKFM GQPDDIAELS GIISVWAIPT HFSFAFFFPI 180
  181 NRFLQCQLKN SVIAISSGVS LVVHIFVCWL FVYVLELGVI GTIATANVSW WLNVFILFTY 240
  241 TTCGGCPLTW TGFSMESFTR LWEFTKLSAS SGIMVCLENW YYRMLIVMTG NLEDARIDVD 300
  301 SMSICMSING LEMMVPLAFF AGTSVRVANE LGAGNGKRAR FAMIISVTQS LIIGIIISVL 360
  361 IYFLLDQIGW MFSSSETVLK AVNNLSILLS FAILLNSVQP VLSGVAVGSG WQSLVAFINL 420
  421 GCYYFIGLPL GIVMGWMFKF GVKGIWAGMI FGGTMVQTLI LIFITMRCDW EKEAQNAKVR 480
  481 VNKWSVSDAR K