YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	41	0.89
Non-Cytoplasmic	42	82	0.95
Transmembrane Helix	83	103	0.89
Cytoplasmic	104	111	0.79
Transmembrane Helix	112	131	0.94
Non-Cytoplasmic	132	136	0.86
Transmembrane Helix	137	159	0.91
Cytoplasmic	160	169	0.86
Transmembrane Helix	170	191	0.88
Non-Cytoplasmic	192	203	0.76
Transmembrane Helix	204	224	0.93
Cytoplasmic	225	284	0.97
Transmembrane Helix	285	307	0.88
Non-Cytoplasmic	308	319	0.82
Transmembrane Helix	320	343	0.86
Cytoplasmic	344	349	0.94
Transmembrane Helix	350	372	0.87
Non-Cytoplasmic	373	383	0.80
Transmembrane Helix	384	405	0.93
Cytoplasmic	406	423	0.82
Transmembrane Helix	424	444	0.92
Non-Cytoplasmic	445	451	0.73
Transmembrane Helix	452	474	0.91
Cytoplasmic	475	526	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGGGFATSA NGVEFEAKIT PIVIISCIMA ATGGLMFGYD VGVSGGVTSM PDFLEKFFPV  60
   61 VYRKVVAGAD KDSNYCKYDN QGLQLFTSSL YLAGLTATFF ASYTTRTLGR RLTMLIAGVF 120
  121 FIIGVALNAG AQDLAMLIAG RILLGCGVGF ANQAVPLFLS EIAPTRIRGG LNILFQLNVT 180
  181 IGILFANLVN YGTAKIKGGW GWRLSLGLAG IPALLLTVGA LLVTETPNSL VERGRLDEGK 240
  241 AVLRRIRGTD NVEPEFADLL EASRLAKEVK HPFRNLLQRR NRPQLVIAVA LQIFQQCTGI 300
  301 NAIMFYAPVL FSTLGFGSDA SLYSAVVTGA VNVLSTLVSI YSVDKVGRRV LLLEAGVQMF 360
  361 FSQVVIAIIL GVKVTDTSTN LSKGFAILVV VMICTYVAAF AWSWGPLGWL IPSETFPLET 420
  421 RSAGQSVTVC VNLLFTFIIA QAFLSMLCHF KFGIFIFFSA WVLIMSVFVM FLLPETKNIP 480
  481 IEEMTERVWK KHWFWARFMD DHNDHEFVNG EKSNGKSNGF DPSTRL