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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LRK63_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLFLLLTI PTRAQRTTTE TPKTEFIFRG FSGNQSNIVT TGAATIKLDG LLRLTDRNSN  60
   61 VTGTSFYHKP VRLLETNTSS TNSTIRSFST SFVFVIIPTS SSNGGFGFTF TLSPTPDRTG 120
  121 AESAQYLGLL NKANDGNSTN HVFAVEFDTV QGFKDGADRT GNHIGLNFNS LTSDVQEPVV 180
  181 YYDNEDPNRK EDFPLQSGDP IRAILDYDGP TQTLNLTVYP ANLKSRPVRP LISRPVPKLS 240
  241 QIVQEEMYVG FTAATGRDQS SAHYVMGWSF SSGGDLLTED TLDLLELPRP PPNTAKKRGY 300
  301 NSQVLALIVA LSGVTVILLA LLFFFVMYKK RLQQGEVLED WEINHPHRLR YKDLYAATDG 360
  361 FKENRIVGTG GFGTVFRGNL SSPSSDQIAV KKITPNSMQG VREFIAEIES LGRLRHKNLV 420
  421 NLQGWCKQKN DLLLIYDYIP NGSLDSLLYS RPRQSGVVLS WNARFKIAKG IASGLLYLHE 480
  481 EWEKVVIHRD IKPSNVLIED DMNPRLGDFG LARLYERGSQ SNTTVVVGTI GYMAPELARN 540
  541 GKSSSASDVF AFGVLLLEIV SGRRPTDSGT FFLADWVMEL HARGEILHAV DPRLGFGYDG 600
  601 VEARLALVVG LLCCHQRPTS RPSMRTVLRY LNGDDDVPEI DNDWGYSDSS RSDLGSNFEG 660
  661 YVSSDRASSS VPSFSVTRVS SSSVISGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle