YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB12C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.93
Transmembrane Helix	33	56	0.86
Cytoplasmic	57	71	0.94
Transmembrane Helix	72	94	0.88
Non-Cytoplasmic	95	111	0.85
Transmembrane Helix	112	131	0.93
Cytoplasmic	132	141	0.88
Transmembrane Helix	142	163	0.86
Non-Cytoplasmic	164	172	0.79
Transmembrane Helix	173	195	0.88
Cytoplasmic	196	336	0.78
Transmembrane Helix	337	362	0.83
Non-Cytoplasmic	363	433	0.50
Transmembrane Helix	434	461	0.79
Cytoplasmic	462	523	0.94
Transmembrane Helix	524	547	0.88
Non-Cytoplasmic	548	553	0.71
Transmembrane Helix	554	571	0.81
Cytoplasmic	572	907	0.96
Transmembrane Helix	908	929	0.91
Non-Cytoplasmic	930	951	0.91
Transmembrane Helix	952	974	0.91
Cytoplasmic	975	984	0.82
Transmembrane Helix	985	1003	0.64
Non-Cytoplasmic	1004	1037	0.68
Transmembrane Helix	1038	1070	0.80
Cytoplasmic	1071	1134	0.84
Transmembrane Helix	1135	1157	0.83
Non-Cytoplasmic	1158	1165	0.77
Transmembrane Helix	1166	1190	0.76
Cytoplasmic	1191	1495	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEALNWYC KPVADGFWEK AVDGAFGAYT PCAIDSLVML VSHFVLLGLC FYRIWIIFHN  60
   61 TKAQIYVLRK KYYNCVLGLL ACYCVVEPVL RLVMGISLFD MDEETDFPPF EVASLMVEAF 120
  121 AWFSMLVLIG LETKQYVKEF RWYVRFGVLY VLVADAVLLD LVLPLKNSIN RTALYLFISS 180
  181 RCSQALFGIL LLIYIPELDP YPGYHIVNNE PLDNVEYDAL RGGEHICPER HASIFSRIYF 240
  241 GWITPLMQLG YRKPITEKDV WQLDKWDQTE TLIKRFQRCW TEESRRPKPW LLRALNNSLG 300
  301 GRFWLAGIFK IGNDLSQFVG PVILSHLLRS MQEGDPAWVG YVYAFIIFVG VTLGVLCEAQ 360
  361 YFQNVWRVGF RLRSTLVAAI FHKSLRLTHE ARKNFASGKV TNMITTDANA LQQISQQLHG 420
  421 LWSAPFRIIV SMILLYQQLG VASLFGSLIL FLLIPLQTLI ISKMRKLTKE GLQWTDKRVG 480
  481 ITNEILSSMD TVKCYAWEKS FESRIQGIRN EELSWFRKAQ LLSAFNSFIL NSIPVVVTVV 540
  541 SFGVFVLLGG DLTPARAFTS LSLFAVLRFP LNMLPNLLSQ VVNANVSLQR IEELLLSEER 600
  601 ILAQNPPLQP GTPAISIKNG YFSWDSKTTK PTLSDINLEI PVGTLVAIVG GTGEGKTSLI 660
  661 SAMLGELSHA ETTSVVIRGS VAYVPQVSWI FNATVRENIL FGSDFESERY WRAIDATALQ 720
  721 HDLDLLPGRD LTEIGERGVN ISGGQKQRVS MARAVYSNSD VYIFDDPLSA LDAHVAHQVF 780
  781 DSCMKDELRG KTRVLVTNQL HFLPLMDKII LVSEGMIKEE GTFVELSKSG ILFKKLMENA 840
  841 GKMDATQEVN TNDENILKLG PTVTVDVSER NLGSTKQGKR RRSVLIKQEE RETGIISWNV 900
  901 LMRYKEAVGG LWVVMILLAC YLATEVLRVS SSTWLSIWTD QSTSKNYSPG FYIVVYALLG 960
  961 FGQVAVTFTN SFWLITSSLH AARRLHDAML SSILRAPMLF FHTNPTGRVI NRFSKDIGDI1020
 1021 DRNVANLMNM FMNQLWQLLS TFALIGTVST ISLWAIMPLL ILFYAAYLYY QSTSREVRRL1080
 1081 DSVTRSPIYA QFGEALNGLS SIRAYKAYDR MAKINGKSMD NNIRFTLANT SSNRWLTIRL1140
 1141 ETLGGVMIWL TATFAVLQNG NTNNQAGFAS TMGLLLSYTL NITSLLSGVL RQASRAENSL1200
 1201 NSVERVGNYI DLPSEATDII ENNRPVCGWP SGGSIKFEDV HLRYRPGLPP VLHGLTFFVS1260
 1261 PSEKVGVVGR TGAGKSSMLN ALFRIVEVEK GRIMIDDCDV AKFGLTDVRR VLSIIPQSPV1320
 1321 LFSGTVRFNI DPFSEHNDAG LWEALHRAHI KDVISRNPFG LDAEVCEGGE NFSVGQRQLL1380
 1381 SLARALLRRS KILVLDEATA SVDVRTDSLI QRTIREEFKS CTMLVIAHRL NTIIDCDKIL1440
 1441 VLSSGQVLEY DSPQELLSRD TSAFFRMVHS TGPANAQYLS NLVFERRENG MSVGG