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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCKL2_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSFTQFL SFPRCNADVP CLLQSHGFVK FRGERWNGKQ SFSMAAGRRK LSESAPLEEE  60
   61 GNDGNGAVVG KKPSKSVKRT TKKKVVVKDE PLEEISEFLV DNDDVLDKES IVSALKPKKT 120
  121 RTRKKAAAAS SDVEEVKTEK KVRRKRTVKK DKDVEDDLAT IMDAEVSDVE EALAVESTDT 180
  181 ESEEEEIDLS KHEGEDISHT YGWPPLVCCF GSAQHAFVPS GRPANRLLDY ELHERMRDAK 240
  241 WAPEKYIRAP GGCAGGVAIA LASLGGKVAF MGKLGADDYG QAMLYYLNVC KVQTRSVKID 300
  301 GKRVTACSTM KISKRGRLKS TCIKPCAEDS LSKSEINVDV LKEAKMFYFS THSLLDKKMM 360
  361 STTIQAIKIS KQLGNVIFYD LNLPLPLWHS SEETKSFIQE VWNLADVIEI TKQELEFLCG 420
  421 IEPTEEFDTE NNDISKFVHY PPETVEQLWH ENLKVLFVTN GTSKIHYYTK EHNGAVSGME 480
  481 DVPITPFTRD MSASGDGIVA GLIRMLTVQP DLMNNKGYLE RTARYAIECG IIDQWLLAQT 540
  541 RGYPPKDDME EEEDDEEEDE VESDPNGIRS ITEKEYRTSK PYDEPDGPYV MKPVEEREYK 600
  601 KLELVGSMFE DGSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle