YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AUX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.75
Transmembrane Helix	48	66	0.59
Non-Cytoplasmic	67	78	0.60
Transmembrane Helix	79	102	0.81
Cytoplasmic	103	137	0.73
Transmembrane Helix	138	164	0.79
Non-Cytoplasmic	165	171	0.68
Transmembrane Helix	172	190	0.90
Cytoplasmic	191	197	0.54
Transmembrane Helix	198	218	0.79
Non-Cytoplasmic	219	231	0.77
Transmembrane Helix	232	253	0.77
Cytoplasmic	254	266	0.83
Transmembrane Helix	267	292	0.86
Non-Cytoplasmic	293	312	0.97
Transmembrane Helix	313	337	0.89
Cytoplasmic	338	352	0.91
Transmembrane Helix	353	373	0.91
Non-Cytoplasmic	374	379	0.75
Transmembrane Helix	380	401	0.92
Cytoplasmic	402	420	0.92
Transmembrane Helix	421	445	0.88
Non-Cytoplasmic	446	485	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGVEAIVA NDNGTDQVNG NRTGKDNEEH DGSTGSNLSN FLWHGGSVWD AWFSCASNQV  60
   61 AQVLLTLPYS FSQLGMLSGI VLQIFYGLLG SWTAYLISVL YVEYRARKEK EGKSFKNHVI 120
  121 QWFEVLDGLL GSYWKALGLA FNCTFLLFGS VIQLIACASN IYYINDHLDK RTWTYIFGAC 180
  181 CATTVFIPSF HNYRIWSFLG LGMTTYTAWY LAIASIIHGQ AEGVKHSGPT KLVLYFTGAT 240
  241 NILYTFGGHA VTVEIMHAMW KPQKFKYIYL MATLYVFTLT IPSAAAVYWA FGDALLDHSN 300
  301 AFSLMPKNAW RDAAVILMLI HQFITFGFAC TPLYFVWEKV IGMHDTKSIC LRALARLPVV 360
  361 IPIWFLAIIF PFFGPINSAV GALLVSFTVY IIPSLAHMLT YRSASARQNA AEKPPFFMPS 420
  421 WTAMYVLNAF VVVWVLIVGF GFGGWASVTN FVRQVDTFGL FAKCYQCKPA AAAAHAPVSA 480
  481 LHHRL