YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.93
Transmembrane Helix	38	57	0.91
Non-Cytoplasmic	58	75	0.74
Transmembrane Helix	76	94	0.88
Cytoplasmic	95	106	0.79
Transmembrane Helix	107	130	0.91
Non-Cytoplasmic	131	148	0.90
Transmembrane Helix	149	171	0.86
Cytoplasmic	172	179	0.69
Transmembrane Helix	180	202	0.89
Non-Cytoplasmic	203	209	0.77
Transmembrane Helix	210	231	0.89
Cytoplasmic	232	251	0.92
Transmembrane Helix	252	270	0.89
Non-Cytoplasmic	271	297	0.67
Transmembrane Helix	298	313	0.75
Cytoplasmic	314	328	0.65
Transmembrane Helix	329	352	0.87
Non-Cytoplasmic	353	372	0.69
Transmembrane Helix	373	394	0.84
Cytoplasmic	395	402	0.71
Transmembrane Helix	403	424	0.86
Non-Cytoplasmic	425	432	0.70
Transmembrane Helix	433	457	0.87
Cytoplasmic	458	476	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLLRDE LLVPSQVTWH TNPLTVELKR VSRLAAPMAT VTIAQYLLPV ISVMVAGHNG  60
   61 ELQLSGVALA NSFTNVTGFS IMCGLVGALE TLCGQAYGAK QYEKIGTYAY SAIASNIPIC 120
  121 FLISILWLYI EKILISLGQD PEISRIAGSY AFWLIPALFG QAIVIPLSRF LLTQGLVIPL 180
  181 LFTAVTTLLF HVLVCWTLVF LFGLGCNGPA MATSVSFWFY AVILSCYVRF SSSCEKTRGF 240
  241 VSRDFVSSIK QFFQYGIPSA AMICLEWWLF EILILCSGLL PNPKLETSVL SICLTIETLH 300
  301 YVISAGVAAA VSTRVSNNLG AGNPQVARVS VLAGLCLWIV ESAFFSILLF TCRNIIGYAF 360
  361 SNSKEVLDYV ADLTPLLCLS FILDGFTAVL NGVARGSGWQ HIGAWNNTVS YYLVGAPVGI 420
  421 YLAFSRELNG KGLWCGVVVG STVQATILAI VTASINWKEQ AEKARKRIVS TENRLA