YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LRX6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREDTFFFQW WFLVSGLSFI FLLPQAFTYH TPPINPCFAH PFLPPITNPR LLKAFTALQA  60
   61 WKFTITSDPN GFTSNWCGPN VCNYTGVFCA PALDNPYVLT VAGIDLNHAN IAGYLPLELG 120
  121 LLTDLALFHI NSNRFQGQLP KTLKCLHLLH ELDVSNNKLS GEFPSVIFSL PSLKFLDIRF 180
  181 NEFQGDVPSQ LFDLNLDALF INDNKFQFRL PRNIGNSPVS VLVLANNDLQ GSCVPPSFYK 240
  241 MGKTLHEIII TNSQLTGCLN REIGLLNQLT VFDVSYNNLV GSLPETIGDM KSLEQLNIAH 300
  301 NKFSGYIPES ICRLPRLENF TYSYNFFSGE PPACLRLQEF DDRRNCLPSR PMQRSLAECK 360
  361 SFSSYPIDCA SFGCSPPSPP PPPPPPPPPP PPPPPPPPPP PPPPPPPYVY PSPPPPPPSP 420
  421 PPYVYPPPPP PYVYPPPPSP PYVYPPPPPS PQPYMYPSPP CNDLPTPVHY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.70
Transmembrane Helix	7	29	0.65
Non-Cytoplasmic	30	470	0.97