YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APXT_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLSAASH LLCSSTRVSL SPAVTSSSSS PVVALSSSTS PHSLGSVASS SLFPHSSFVL  60
   61 QKKHPINGTS TRMISPKCAA SDAAQLISAK EDIKVLLRTK FCHPILVRLG WHDAGTYNKN 120
  121 IEEWPLRGGA NGSLRFEAEL KHAANAGLLN ALKLIQPLKD KYPNISYADL FQLASATAIE 180
  181 EAGGPDIPMK YGRVDVVAPE QCPEEGRLPD AGPPSPADHL RDVFYRMGLD DKEIVALSGA 240
  241 HTLGRARPDR SGWGKPETKY TKTGPGEAGG QSWTVKWLKF DNSYFKDIKE KRDDDLLVLP 300
  301 TDAALFEDPS FKNYAEKYAE DVAAFFKDYA EAHAKLSNLG AKFDPPEGIV IENVPEKFVA 360
  361 AKYSTGKKEL SDSMKKKIRA EYEAIGGSPD KPLPTNYFLN IIIAIGVLVL LSTLFGGNNN 420
  421 SDFSGF

Type	Start	End	Confidence
Signal Peptide	1	26	0.91
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	396	0.96
Transmembrane Helix	397	417	0.81
Cytoplasmic	418	426	0.74