YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT23_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.95
Transmembrane Helix	72	95	0.88
Non-Cytoplasmic	96	106	0.83
Transmembrane Helix	107	126	0.77
Cytoplasmic	127	135	0.54
Transmembrane Helix	136	155	0.86
Non-Cytoplasmic	156	161	0.58
Transmembrane Helix	162	183	0.86
Cytoplasmic	184	190	0.61
Transmembrane Helix	191	213	0.75
Non-Cytoplasmic	214	229	0.54
Transmembrane Helix	230	252	0.88
Cytoplasmic	253	287	0.66
Transmembrane Helix	288	309	0.84
Non-Cytoplasmic	310	320	0.59
Transmembrane Helix	321	342	0.84
Cytoplasmic	343	358	0.69
Transmembrane Helix	359	379	0.92
Non-Cytoplasmic	380	383	0.67
Transmembrane Helix	384	407	0.90
Cytoplasmic	408	414	0.64
Transmembrane Helix	415	438	0.88
Non-Cytoplasmic	439	447	0.61
Transmembrane Helix	448	468	0.94
Cytoplasmic	469	539	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHNHSNEEG SIGTSLHGVT AREQVFSFSV DASSQTVQSD DPTAKFALPV DSEHRAKVFN  60
   61 PLSFAKPHMR AFHLGWLSFF TCFISTFAAA PLVPIIRDNL DLTKTDIGNA GVASVSGAIF 120
  121 SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY 180
  181 WTSVMFNGKI IGLVNGCAGG WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF 240
  241 LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG 300
  301 IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW 360
  361 TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC GALFGVAPFV SRRSLGLISG 420
  421 LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST 480
  481 DGERSQEEYY YGSEWTENEK QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV