YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.59
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	48	0.50
Transmembrane Helix	49	67	0.94
Cytoplasmic	68	80	0.48
Transmembrane Helix	81	98	0.69
Non-Cytoplasmic	99	106	0.39
Transmembrane Helix	107	133	0.84
Cytoplasmic	134	145	0.39
Transmembrane Helix	146	165	0.39
Non-Cytoplasmic	166	214	0.63
Transmembrane Helix	215	237	0.91
Cytoplasmic	238	246	0.53
Transmembrane Helix	247	265	0.60
Non-Cytoplasmic	266	266	0.51
Transmembrane Helix	267	289	0.81
Cytoplasmic	290	300	0.71
Transmembrane Helix	301	320	0.91
Non-Cytoplasmic	321	338	0.77
Transmembrane Helix	339	363	0.84
Cytoplasmic	364	382	0.81
Transmembrane Helix	383	404	0.89
Non-Cytoplasmic	405	415	0.79
Transmembrane Helix	416	437	0.88
Cytoplasmic	438	529	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG  60
   61 TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK KKFFHNFLTI MSFGVIGVFI 120
  121 STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE 180
  181 GVVNDATSVV LFNAVQKIQF ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL 240
  241 YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR 300
  301 HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL 360
  361 SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA FKQFTYSGVT LDPVNAAMVT 420
  421 NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA 480
  481 STNFNRAKDS ISLLMEQPVY TIHRYWRKFD DTYMRPIFGG PRRENQPEC