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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CESA6_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTGGRLIAG SHNRNEFVLI NADENARIRS VQELSGQTCQ ICRDEIELTV DGEPFVACNE  60
   61 CAFPVCRPCY EYERREGNQA CPQCKTRFKR LKGSPRVEGD EEEDDIDDLD NEFEYGNNGI 120
  121 GFDQVSEGMS ISRRNSGFPQ SDLDSAPPGS QIPLLTYGDE DVEISSDRHA LIVPPSLGGH 180
  181 GNRVHPVSLS DPTVAAHPRP MVPQKDLAVY GYGSVAWKDR MEEWKRKQNE KLQVVRHEGD 240
  241 PDFEDGDDAD FPMMDEGRQP LSRKIPIKSS KINPYRMLIV LRLVILGLFF HYRILHPVKD 300
  301 AYALWLISVI CEIWFAVSWV LDQFPKWYPI ERETYLDRLS LRYEKEGKPS GLSPVDVFVS 360
  361 TVDPLKEPPL ITANTVLSIL AVDYPVDKVA CYVSDDGAAM LTFEALSETA EFARKWVPFC 420
  421 KKYCIEPRAP EWYFCHKMDY LKNKVHPAFV RERRAMKRDY EEFKVKINAL VATAQKVPED 480
  481 GWTMQDGTPW PGNSVRDHPG MIQVFLGSDG VRDVENNELP RLVYVSREKR PGFDHHKKAG 540
  541 AMNSLIRVSG VLSNAPYLLN VDCDHYINNS KALREAMCFM MDPQSGKKIC YVQFPQRFDG 600
  601 IDRHDRYSNR NVVFFDINMK GLDGLQGPIY VGTGCVFRRQ ALYGFDAPKK KKGPRKTCNC 660
  661 WPKWCLLCFG SRKNRKAKTV AADKKKKNRE ASKQIHALEN IEEGRVTKGS NVEQSTEAMQ 720
  721 MKLEKKFGQS PVFVASARME NGGMARNASP ACLLKEAIQV ISCGYEDKTE WGKEIGWIYG 780
  781 SVTEDILTGF KMHSHGWRSV YCTPKLAAFK GSAPINLSDR LHQVLRWALG SVEIFLSRHC 840
  841 PIWYGYGGGL KWLERLSYIN SVVYPWTSLP LIVYCSLPAI CLLTGKFIVP EISNYASILF 900
  901 MALFSSIAIT GILEMQWGKV GIDDWWRNEQ FWVIGGVSAH LFALFQGLLK VLAGVDTNFT 960
  961 VTSKAADDGE FSDLYLFKWT SLLIPPMTLL IINVIGVIVG VSDAISNGYD SWGPLFGRLF1020
 1021 FALWVIIHLY PFLKGLLGKQ DRMPTIIVVW SILLASILTL LWVRVNPFVA KGGPILEICG1080
 1081 LDCL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle