YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.55
Transmembrane Helix	20	42	0.94
Non-Cytoplasmic	43	50	0.47
Transmembrane Helix	51	69	0.95
Cytoplasmic	70	77	0.45
Transmembrane Helix	78	100	0.71
Non-Cytoplasmic	101	108	0.40
Transmembrane Helix	109	135	0.84
Cytoplasmic	136	144	0.37
Transmembrane Helix	145	167	0.70
Non-Cytoplasmic	168	174	0.43
Transmembrane Helix	175	197	0.52
Cytoplasmic	198	216	0.38
Transmembrane Helix	217	239	0.92
Non-Cytoplasmic	240	259	0.44
Transmembrane Helix	260	290	0.77
Cytoplasmic	291	302	0.55
Transmembrane Helix	303	322	0.81
Non-Cytoplasmic	323	340	0.72
Transmembrane Helix	341	364	0.86
Cytoplasmic	365	382	0.72
Transmembrane Helix	383	401	0.92
Non-Cytoplasmic	402	415	0.69
Transmembrane Helix	416	437	0.92
Cytoplasmic	438	546	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG  60
   61 TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV KKKQFFRNFV TIMAFGAIGT 120
  121 VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF 180
  181 GEGVVNDATS VVLFNAIQSF DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK 240
  241 KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT 300
  301 TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF 360
  361 PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA YNKFTRSGHT ELRGNAIMIT 420
  421 STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF 480
  481 ELPGSHQDVP RPNSLRGFLM RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS 540
  541 HDLSKP