YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR48_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.65
Transmembrane Helix	32	51	0.61
Non-Cytoplasmic	52	58	0.52
Transmembrane Helix	59	78	0.91
Cytoplasmic	79	84	0.61
Transmembrane Helix	85	107	0.90
Non-Cytoplasmic	108	127	0.66
Transmembrane Helix	128	152	0.77
Cytoplasmic	153	172	0.75
Transmembrane Helix	173	194	0.91
Non-Cytoplasmic	195	201	0.65
Transmembrane Helix	202	226	0.87
Cytoplasmic	227	255	0.77
Transmembrane Helix	256	279	0.86
Non-Cytoplasmic	280	299	0.73
Transmembrane Helix	300	323	0.87
Cytoplasmic	324	335	0.69
Transmembrane Helix	336	356	0.90
Non-Cytoplasmic	357	373	0.71
Transmembrane Helix	374	394	0.81
Cytoplasmic	395	409	0.80
Transmembrane Helix	410	432	0.85
Non-Cytoplasmic	433	452	0.83
Transmembrane Helix	453	472	0.95
Cytoplasmic	473	481	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEALLVGR TLLKRGIPTI PFILASQALE KLAYFGLVPN MILFLTVEYG MGTAEAANIL  60
   61 FLWSAATNFF PLVGAFIADS YTGRFPLIGF GSSISLTGMV LLWLTTIIRP ECDKLTNVCQ 120
  121 PTTLLKSVLL YSFFALTAIG AGGVRSSCLA FAADQLQPNQ TSRVTTSSLE TLFNWYYFSV 180
  181 MVACFLSQSL LVFVQTTYGW QIGFGVSVAA MALSVALFFA ASPYYVRFQK PTRNSRNPWK 240
  241 LCRVQQVEDL KSLINVIPIW STGIILSLVT ACQVSFIVLQ AKTMDRHTFI QGFEIPPGSY 300
  301 GIFLVISFLL FLGLYDLVIV PLLSWALREP FRLGVMVRMW AGYVISVLCI SALAATEYAR 360
  361 RKTARDESGT KLSAMWLLPY MILGGIAEAL NTIAQNEFFY SELPKTMSSV ATTLSSLNMA 420
  421 AASLISSWII TIVDVTTYGS WITENIDEGH LDYYYWLLVG LSLLNVLYFV WCKKSYGKCS 480
  481 I