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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PPA2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVNFSFFLL LFVSVFVSSA DSKATISISP NALNRSGDSV VIQWSGVDSP SDLDWLGLYS  60
   61 PPESPNDHFI GYKFLNESST WKDGFGSISL PLTNLRSNYT FRIFRWSESE IDPKHKDHDQ 120
  121 NPLPGTKHLL AESEQLTFGS GVGMPEQIHL SFTNMVNTMR VMFVAGDGEE RFVRYGESKD 180
  181 LLGNSAAARG MRYEREHMCD SPANSTIGWR DPGWIFDTVM KNLNDGVRYY YQVGSDSKGW 240
  241 SEIHSYIARD VTAEETVAFM FGDMGCATPY TTFIRTQDES ISTVKWILRD IEALGDKPAM 300
  301 ISHIGDISYA RGYSWVWDEF FAQVEPIAST VPYHVCIGNH EYDFSTQPWK PDWAASIYGN 360
  361 DGGGECGVPY SLKFNMPGNS SESTGMKAPP TRNLYYSYDM GTVHFVYIST ETNFLKGGSQ 420
  421 YEFIKRDLES VDRKKTPFVV VQGHRPMYTT SNEVRDTMIR QKMVEHLEPL FVKNNVTLAL 480
  481 WGHVHRYERF CPISNNTCGT QWQGNPVHLV IGMAGQDWQP IWQPRPNHPD LPIFPQPEQS 540
  541 MYRTGEFGYT RLVANKEKLT VSFVGNHDGE VHDTVEMLAS GVVISGSKES TKIPNLKTVP 600
  601 ASATLMGKSE SNALWYAKGA GLMVVGVLLG FIIGFFTRGK KSSSGNRWIP VKNEET

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle