YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7268410, gi\|7...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQRTLMFS CWVLSLLIIK TTAYNEKQLF QPLETENANA MTAVMERGLK TQRRPEHKNA  60
   61 YATMMYMGTP RDYEFYVATR VLIRSLKSLH VDADIVVIAS LDVPINWIHA LEEEDGAKVV 120
  121 RVENLENPYK KQTNFDNRFK LSLNKLYAWS LSDYDRVVML DVDNLFLKNT DELFQCGQFC 180
  181 AVFINPCIFH TGLFVLQPSM EVFRDMLHEL EVKRDNPDGA DQGFLVSYFS DLLNQPLFRP 240
  241 PPDNRTALKG HFRLPLGYQM DASYYSEMPW VLTQAVFYLG IILVTRLARP NMTKLCYRRS 300
  301 DKNLSMIQTA FKFVALLFIL SAYIIPFFII PQTIHPLIGW SLYLTGSFAL STIPINAFLL 360
  361 PILPVITPWL GIFGTLLVMA FPSYPDGVVR ALSVFGYAFC CAPFLWVSFV KITSHLQIMI 420
  421 DKEVLFPRLG ESGVTSGLSK LY

Type	Start	End	Confidence
Signal Peptide	1	23	0.84
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	269	0.92
Transmembrane Helix	270	288	0.95
Cytoplasmic	289	308	0.92
Transmembrane Helix	309	330	0.93
Non-Cytoplasmic	331	336	0.79
Transmembrane Helix	337	359	0.79
Cytoplasmic	360	364	0.58
Transmembrane Helix	365	384	0.87
Non-Cytoplasmic	385	390	0.67
Transmembrane Helix	391	410	0.93
Cytoplasmic	411	442	0.84