YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12323814, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKLFLGQY LICVILLLGQ LHGYKSCIEK ERKALLELKA FLIPLNAGEW NDNVLSWTND  60
   61 TKSDCCQWMG VECNRKSGRI TNIAFGIGFI IENPLLNLSL LHPFEDVRSL DLSSSRSCED 120
  121 CGFSGLFDDV EGYKSLSRLR NLEILDLSSH RFNNSIFPFL NAATSLTTLF LTYNNMHSPF 180
  181 LVKEFKDLTN LEHLDLRGNR FNGSIPTQDY NSLRRFRKLE ILDLSDNLFN SRIFPFLNSA 240
  241 TSLKSLSLWG NNMGGPFPAK ELRDLTNVEL LDLSRNRFNG SIPVRALFAL RKLKALDLSD 300
  301 NEFSSSVELQ GKFAKTKPLS GTCPWKNMEE LKLSNNKLAG QFPLCLTSLT GLRVLDLSSN 360
  361 QLTGNVPSAL ANLESLEYLS LFGNNFEGFF SLGLLANLSK LKVLRLDSQS NSLEVEFETS 420
  421 WKPKFQLVVI ALRSCNLEKV PHFLLHQKDL HHVDLSDNQI HGNFPSWLLE NNTKLEVLLL 480
  481 QNNSFTSFQL PKSAHNLLFL NVSVNKFNHL FLQNFGWILP HLVCVNLAYN GFQGNLPSSL 540
  541 DNMKSIEFLD LSHNRFHGKL PRRFLKGCYN LTILKLSHNK LSGEVFPEAA NFTRLWVMSM 600
  601 DNNLFTGNIG KGFRSLPSLN VLDISNNKLT GVIPSWIGER QGLFALQLSN NMLEGEIPTS 660
  661 LFNISYLQLL DLSSNRLSGD IPPHVSSIYH GAVLLLQNNN LSGVIPDTLL LNVIVLDLRN 720
  721 NRLSGNLPEF INTQNISILL LRGNNFTGQI PHQFCSLSNI QLLDLSNNKF NGSIPSCLSN 780
  781 TSFGLRKGDD SYRYDVPSRF GTAKDPVYFE SLLMIDEFNM VNETNSQTKI EFATKHRYDA 840
  841 YMGGNLKLLF GMDLSENELS GEIPVELGGL VELEALNLSH NNLSGVILES FSGLKNVESL 900
  901 DLSFNRLQGP IPLQLTDMIS LAVFNVSYNN LSGIVPQGRQ FNTFETQSYF GNPLLCGKSI 960
  961 DISCASNNFH PTDNGVEADE STVDMESFYW SFVAAYVTIL LGILASLSFD SPWSRAWFYI1020
 1021 VDAFVLKVRN MLWQNTAGTK CSYVLVSLSS PSVVVLLKPP ALFHKTRT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle