YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y1421_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFLFFFSL ILCFVLISSQ TLEDDKKALL HFLSSFNSSR LHWNQSSDVC HSWTGVTCNE  60
   61 NGDRIVSVRL PAVGFNGLIP PFTISRLSSL KFLSLRKNHF TGDFPSDFTN LKSLTHLYLQ 120
  121 HNHLSGPLLA IFSELKNLKV LDLSNNGFNG SIPTSLSGLT SLQVLNLANN SFSGEIPNLH 180
  181 LPKLSQINLS NNKLIGTIPK SLQRFQSSAF SGNNLTERKK QRKTPFGLSQ LAFLLILSAA 240
  241 CVLCVSGLSF IMITCFGKTR ISGKLRKRDS SSPPGNWTSR DDNTEEGGKI IFFGGRNHLF 300
  301 DLDDLLSSSA EVLGKGAFGT TYKVTMEDMS TVVVKRLKEV VVGRREFEQQ MEIIGMIRHE 360
  361 NVAELKAYYY SKDDKLAVYS YYNHGSLFEI LHGNRGRYHR VPLDWDARLR IATGAARGLA 420
  421 KIHEGKFIHG NIKSSNIFLD SQCYGCIGDV GLTTIMRSLP QTTCLTSGYH APEITDTRRS 480
  481 TQFSDVYSFG VVLLELLTGK SPVSQAELVP TGGENMDLAS WIRSVVAKEW TGEVFDMEIL 540
  541 SQSGGFEEEM VEMLQIGLAC VALKQQERPH IAQVLKLIED IRSVDAE

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	230	0.99
Transmembrane Helix	231	256	0.89
Cytoplasmic	257	587	0.96