YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STT3B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	61	0.91
Non-Cytoplasmic	62	102	0.97
Transmembrane Helix	103	126	0.90
Cytoplasmic	127	137	0.77
Transmembrane Helix	138	157	0.94
Non-Cytoplasmic	158	163	0.82
Transmembrane Helix	164	182	0.94
Cytoplasmic	183	193	0.75
Transmembrane Helix	194	218	0.81
Non-Cytoplasmic	219	230	0.72
Transmembrane Helix	231	251	0.93
Cytoplasmic	252	259	0.83
Transmembrane Helix	260	280	0.94
Non-Cytoplasmic	281	289	0.79
Transmembrane Helix	290	309	0.92
Cytoplasmic	310	324	0.84
Transmembrane Helix	325	347	0.90
Non-Cytoplasmic	348	384	0.94
Transmembrane Helix	385	403	0.92
Cytoplasmic	404	411	0.71
Transmembrane Helix	412	446	0.76
Non-Cytoplasmic	447	735	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKSEPAKS ESMATKPDLL NTSFFSFKSL KLKTKQQELL LRISILGLVY ILAFIARLFS  60
   61 VLRYESMIHE FDPYFNYRTT LFLTEKGFYE FWNWFDSESW YPLGRIIGGT LYPGLMVTAA 120
  121 LIYWTLRFLR FFVHIREVCV LTAPFFASNT TLVAYFFGKE LWDTGAGLVA AVLIAICPGY 180
  181 ISRSVAGSYD NEAVAIFALL LTFYLFVKAV NTGSLAWALA SAFGYFYMVS AWGGYVFIIN 240
  241 LVPLYVLVLL ITGRYSMRLY IAYNCMYILG MLLAMQIRFV GFQHVQSGEH MGAMGVFLLM 300
  301 QVFYFLDWVK YQLNDTKLFQ TFLRITVTSA ILVGGVAVGV GTASGYISPW TGRFYSLLDP 360
  361 TYAKDHIPII ASVSEHQPTA WSSFMFDYHI LLFLFPAGLY FCFKRLTDAT IFIVMYGLTS 420
  421 LYFAGVMVRL ILVATPAVCL ISAIAVSATI KNLTSLLRTK QKVSQTGSTK GAGSSKASSK 480
  481 VTLDQSQPFQ KNGAIALLVG VFYLLSRYAI HCTWVTAEAY SSPSIVLAAR GAHGNRIIFD 540
  541 DYREAYYWLR QNTATDAKIM SWWDYGYQIT AMGNRTVIVD NNTWNNTHIA TVGRAMSSYE 600
  601 DDAYDIMRSL DVNYVLVVFG GVTGYSSDDI NKFLWMVRIG GGVFPVIKEP DYLVNGEFRV 660
  661 DKGASPKMLN CLMYKLCYYR FGELTTEYGK PPGYDRARGV EIGNKDIKLE HLEEAYTTSN 720
  721 WIVRIYRVKP PTNRL