YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42561620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.39
Transmembrane Helix	6	28	0.83
Cytoplasmic	29	30	0.37
Transmembrane Helix	31	52	0.65
Non-Cytoplasmic	53	57	0.60
Transmembrane Helix	58	79	0.88
Cytoplasmic	80	141	0.71
Transmembrane Helix	142	161	0.78
Non-Cytoplasmic	162	179	0.88
Transmembrane Helix	180	202	0.89
Cytoplasmic	203	305	0.97
Transmembrane Helix	306	325	0.87
Non-Cytoplasmic	326	328	0.52
Transmembrane Helix	329	348	0.66
Cytoplasmic	349	354	0.61
Transmembrane Helix	355	378	0.78
Non-Cytoplasmic	379	397	0.67
Transmembrane Helix	398	421	0.89
Cytoplasmic	422	439	0.64
Transmembrane Helix	440	462	0.91
Non-Cytoplasmic	463	481	0.67
Transmembrane Helix	482	501	0.89
Cytoplasmic	502	502	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAPVIKLV LGSVAFAIFW ILAVFPSVPF LPIGRTAGSL FGAMLMVIFQ VITPEQAYAA  60
   61 IDLPILGLLF GTMVVSIYLE RADMFKYLGT LLSWKSRGPK DLLCRVCLVS AVSSALFTND 120
  121 TSCVVLTEFV LKIARQKNLP PHPFLLALAT SANIGSSATP IGNPQNLVIA VQSKIPFWEF 180
  181 LLGVFPAMIV GITVNAMLLL GMYWRLLSDH KEDEEEVQNA DSEVVAQEDV QSHRFSPATF 240
  241 SPVSSEDSNL RMDAAETLRN RAGSAGESEL ISCNSNASRE QHNDAESQGE SNNTNNMFQT 300
  301 KRWRRVLWKS SVYFITLGML ISLLMGLNMS WTAITAALAL VVLDFKDARP SLEKVSYSLL 360
  361 IFFCGMFITV DGFNKTGIPT ALWDLMEPYA KIDQAKGIAV LAVVILVLSN VASNVPTVLL 420
  421 LGARVAASAM GREEEKKAWL LLAWVSTVAG NLTLLGSAAN LIVCEQARRA VSHGYTLTFT 480
  481 KHFKFGLPST LIVTAIGLFL IK