YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IPCS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT  60
   61 LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI VKSKKIYTVL IWCRVLAFLV 120
  121 ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS 180
  181 HMIFTLVFVR TYQKYGSKRF IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF 240
  241 LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN 300
  301 ATNGT

Type	Start	End	Confidence
Cytoplasmic	1	30	0.74
Transmembrane Helix	31	48	0.63
Non-Cytoplasmic	49	76	0.87
Transmembrane Helix	77	97	0.91
Cytoplasmic	98	109	0.76
Transmembrane Helix	110	130	0.94
Non-Cytoplasmic	131	167	0.97
Transmembrane Helix	168	189	0.92
Cytoplasmic	190	199	0.85
Transmembrane Helix	200	218	0.89
Non-Cytoplasmic	219	226	0.65
Transmembrane Helix	227	241	0.61
Cytoplasmic	242	305	0.66