YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.83
Transmembrane Helix	53	71	0.67
Non-Cytoplasmic	72	83	0.58
Transmembrane Helix	84	107	0.82
Cytoplasmic	108	143	0.65
Transmembrane Helix	144	170	0.80
Non-Cytoplasmic	171	177	0.54
Transmembrane Helix	178	196	0.87
Cytoplasmic	197	203	0.45
Transmembrane Helix	204	223	0.65
Non-Cytoplasmic	224	237	0.81
Transmembrane Helix	238	259	0.81
Cytoplasmic	260	273	0.84
Transmembrane Helix	274	298	0.88
Non-Cytoplasmic	299	319	0.97
Transmembrane Helix	320	343	0.89
Cytoplasmic	344	358	0.91
Transmembrane Helix	359	379	0.92
Non-Cytoplasmic	380	385	0.77
Transmembrane Helix	386	407	0.93
Cytoplasmic	408	426	0.89
Transmembrane Helix	427	449	0.91
Non-Cytoplasmic	450	488	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEKQAEES IVVSGEDEVA GRKVEDSAAE EDIDGNGGNG FSMKSFLWHG GSAWDAWFSC  60
   61 ASNQVAQVLL TLPYSFSQLG MLSGILLQIF YGLMGSWTAY LISVLYVEYR ARMEKQEAKS 120
  121 FKNHVIQWFE VLDGLLGPYW KAAGLAFNCT FLLFGSVIQL IACASNIYYI NDRLDKRTWT 180
  181 YIFGACCATT VFIPSFHNYR IWSFLGLGMT TYTAWYLTIA SFLHGQAEGV THSGPTKLVL 240
  241 YFTGATNILY TFGGHAVTVE IMHAMWKPRK FKSIYLMATL YVFTLTLPSA SAVYWAFGDQ 300
  301 LLNHSNAFSL LPKTRFRDTA VILMLIHQFI TFGFACTPLY FVWEKAIGMH HTKSLCLRAL 360
  361 VRLPVVVPIW FLAIIFPFFG PINSAVGALL VTFTVYIIPA LAHMLTYRTA SARRNAAEKP 420
  421 PFFIPSWAGV YVINAFIVVW VLVLGFGFGG WASMTNFIRQ IDTFGLFAKC YQCKPPPAPI 480
  481 AAGAHHRR