YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	60	0.74
Transmembrane Helix	61	83	0.86
Cytoplasmic	84	152	0.91
Transmembrane Helix	153	170	0.85
Non-Cytoplasmic	171	175	0.69
Transmembrane Helix	176	196	0.87
Cytoplasmic	197	262	0.87
Transmembrane Helix	263	286	0.91
Non-Cytoplasmic	287	300	0.94
Transmembrane Helix	301	323	0.88
Cytoplasmic	324	347	0.84
Transmembrane Helix	348	369	0.90
Non-Cytoplasmic	370	374	0.63
Transmembrane Helix	375	395	0.87
Cytoplasmic	396	404	0.86
Transmembrane Helix	405	427	0.90
Non-Cytoplasmic	428	441	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSQSSPTK DASTKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG  60
   61 WGPGVTIMIM SWLITFYTLW QMVQMHEMVP GKRFDRYHEL GQHAFGEKLG LWIVVPQQLI 120
  121 VEVGVDIVYM VTGGKSLKKI HDLLCTDCKN IRTTYWIMIF ASIHFVLAHL PNFNSISIVS 180
  181 LAAAVMSLSY STIAWATSVK KGVHPNVDYS SRASTTSGNV FNFLNALGDV AFAYAGHNVV 240
  241 LEIQATIPST PEKPSKIAMW KGVVVAYIVV AICYFPVAFV CYYIFGNSVD DNILMTLEKP 300
  301 IWLIAIANAF VVVHVIGSYQ IYAMPVFDML ETFLVKKMMF APSFKLRFIT RTLYVAFTMF 360
  361 VAICIPFFGG LLGFFGGFAF APTTYYLPCI MWLCIKKPKK YGLSWCINWF CIVVGVILTI 420
  421 LAPIGGLRTI IISAKNYEFF S