YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHSC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.92
Transmembrane Helix	30	48	0.86
Non-Cytoplasmic	49	54	0.75
Transmembrane Helix	55	75	0.91
Cytoplasmic	76	83	0.71
Transmembrane Helix	84	103	0.82
Non-Cytoplasmic	104	112	0.71
Transmembrane Helix	113	133	0.86
Cytoplasmic	134	142	0.77
Transmembrane Helix	143	163	0.80
Non-Cytoplasmic	164	169	0.58
Transmembrane Helix	170	191	0.90
Cytoplasmic	192	241	0.79
Transmembrane Helix	242	266	0.86
Non-Cytoplasmic	267	291	0.67
Transmembrane Helix	292	310	0.68
Cytoplasmic	311	335	0.81
Transmembrane Helix	336	357	0.89
Non-Cytoplasmic	358	365	0.70
Transmembrane Helix	366	384	0.95
Cytoplasmic	385	398	0.88
Transmembrane Helix	399	419	0.92
Non-Cytoplasmic	420	424	0.75
Transmembrane Helix	425	444	0.96
Cytoplasmic	445	478	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISEASKSS HELPVTTAES SGKKATAKKL TLIPLVFLIY FEVAGGPFGE EPAVQAAGPL  60
   61 LAILGFLIFP FIWSIPEALI TAELSTAFPG NGGFVIWAHR AFGSFVGSMM GSLKFLSGVI 120
  121 NVASFPVLCV TYLDKLFPVL ESGWPRNVCI FASTVVLSFL NYTGLAIVGY AAVVLGLVSL 180
  181 SPFLVMSAMA IPKIKPHRWG SLGTKKKDWN LYFNTLFWNL NFWDNVSTLA GEVDEPQKTF 240
  241 PLALLIAVIF TCVAYLIPLF AVTGAVSVDQ SRWENGFHAE AAEMIAGKWL KIWIEIGAVL 300
  301 SSIGLFEAQL SSSAYQLEGM AELGFLPKFF GVRSKWFNTP WVGILISALM SLGLSYMNFT 360
  361 DIISSANFLY TLGMFLEFAS FIWLRRKLPQ LKRPYRVPLK IPGLVVMCLI PSAFLVLILV 420
  421 FATKIVYLIC GVMTIGAIGW YFLINYFRKT KIFEFNEVID DLDNNVNGEH PKVDDHNS