YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP511_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELDSENKLL KTGLVIVATL VIAKLIFSFF TSDSKKKRLP PTLKAWPPLV GSLIKFLKGP  60
   61 IIMLREEYPK LGSVFTVNLV HKKITFLIGP EVSAHFFKAS ESDLSQQEVY QFNVPTFGPG 120
  121 VVFDVDYSVR QEQFRFFTEA LRVNKLKGYV DMMVTEAEDY FSKWGESGEV DIKVELERLI 180
  181 ILTASRCLLG REVRDQLFDD VSALFHDLDN GMLPISVLFP YLPIPAHRRR DRAREKLSEI 240
  241 FAKIIGSRKR SGKTENDMLQ CFIESKYKDG RQTTESEVTG LLIAALFAGQ HTSSITSTWT 300
  301 GAYLMRYKEY FSAALDEQKN LIAKHGDKID HDILSEMDVL YRCIKEALRL HPPLIMLMRA 360
  361 SHSDFSVTAR DGKTYDIPKG HIVATSPAFA NRLPHIFKDP DTYDPERFSP GREEDKAAGA 420
  421 FSYIAFGGGR HGCLGEPFAY LQIKAIWSHL LRNFELELVS PFPEIDWNAM VVGVKGNVMV 480
  481 RYKRRQLS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	30	0.75
Non-Cytoplasmic	31	488	0.95