YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6664322
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	227	0.99
Transmembrane Helix	228	249	0.95
Cytoplasmic	250	289	0.95
Transmembrane Helix	290	312	0.92
Non-Cytoplasmic	313	322	0.77
Transmembrane Helix	323	344	0.90
Cytoplasmic	345	361	0.88
Transmembrane Helix	362	384	0.90
Non-Cytoplasmic	385	391	0.67
Transmembrane Helix	392	416	0.85
Cytoplasmic	417	447	0.94
Transmembrane Helix	448	469	0.89
Non-Cytoplasmic	470	483	0.87
Transmembrane Helix	484	506	0.93
Cytoplasmic	507	514	0.91
Transmembrane Helix	515	535	0.87
Non-Cytoplasmic	536	536	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQFLLTVLQ VLLALTFWIG IGSGSSNHYN AGDHVPLFVN KVGPLHNPSE TYQYYDLPFC  60
   61 RRGPVIEKQE TLGEVLNGDR LMSSLYKLKF REDKTHFVLC RKRLTSSDIA RFRDIIAQDY 120
  121 YFQMYYDDLP LWGFVGKVEG DYFGQGEKHT KYYIFSHLKF NVLYNADKVI EINSFSDPSY 180
  181 MVDISENTEI DVQFTYSVSW NLTSERSETR MNKYSRASFH PISQKIHFFS FLNSITVVVL 240
  241 LIGLISFLFM RHLKNELRSY SIGDEEERKE AGWKLVHSDV FRCPRNISWL CAILGTGTQL 300
  301 LILIIALFAL AFTGFLYPYN RGMLLTSLVI MYTLTSIVAG YTSTSFHSQF EGNKQKRSVR 360
  361 LAGILYPVPF FIILSVLNTV AITYGATAAL PFGTIVIIIL IFTLLNIPFL MLGGVLGNRF 420
  421 GLLEFQPPSA VKRNPREIPP QNWYRRKLYQ VFLGGFVPFS AVVLEWHQLY ASLWGFKIYT 480
  481 SPGIMLFTFI VLIFLSSSVG IILTYIQLSG EDHEWWWRYV FLYCTAFFSI QTCGFD