YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA29_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNRRRRSL FDFLLFSVFL GLACLCLSPI PATAQRRKLR FSVNGEFKIL QVADMHFANG  60
   61 AKTQCQNVLP SQRAHCSDLN TTIFMSRVIA AEKPDLIVFT GDNIFGFDVK DALKSINAAF 120
  121 APAIASKIPW VAILGNHDQE STFTRQQVMN HIVKLPNTLS QVNPPEAAHY IDGFGNYNLQ 180
  181 IHGAADSKLQ NKSVLNLYFL DSGDYSSVPY MEGYDWIKTS QQFWFDRTSK RLKREYNAKP 240
  241 NPQEGIAPGL AYFHIPLPEF LSFDSKNATK GVRQEGTSAA STNSGFFTTL IARGDVKSVF 300
  301 VGHDHVNDFC GELKGLNLCY GGGFGYHAYG KAGWERRARV VVVDLNKKRK GKWGAVKSIK 360
  361 TWKRLDDKHL SVIDSQVLWN NSANKLVVR

Type	Start	End	Confidence
Signal Peptide	1	34	0.98
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	389	0.99