YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U78D3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPSQPTRD SHVAVLVFPF GTHAAPLLAV TCRLATAAPS TVFSFFSTAR SNSSLLSSDI  60
   61 PTNIRVHNVD DGVPEGFVLT GNPQHAVELF LEAAPEIFRR EIKAAETEVG RKFKCILTDA 120
  121 FLWLAAETAA AEMKASWVAY YGGGATSLTA HLYTDAIREN VGVKEVGERM EETIGFISGM 180
  181 EKIRVKDTQE GVVFGNLDSV FSKTLHQMGL ALPRATAVFI NSFEELDPTF TNDFRSEFKR 240
  241 YLNIGPLALL SSPSQTSTLV HDPHGCLAWI EKRSTASVAY IAFGRVATPP PVELVAIAQG 300
  301 LESSKVPFVW SLQEMKMTHL PEGFLDRTRE QGMVVPWAPQ VELLNHEAMG VFVSHGGWNS 360
  361 VLESVSAGVP MICRPIFGDH AINARSVEAV WEIGVTISSG VFTKDGFEES LDRVLVQDDG 420
  421 KKMKVNAKKL EELAQEAVST KGSSFENFGG LLDEVVNFG

Type	Start	End	Confidence
Signal Peptide	1	24	0.86
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	459	0.98