YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.89
Transmembrane Helix	36	58	0.88
Non-Cytoplasmic	59	65	0.63
Transmembrane Helix	66	87	0.82
Cytoplasmic	88	108	0.71
Transmembrane Helix	109	143	0.64
Non-Cytoplasmic	144	185	0.54
Transmembrane Helix	186	209	0.87
Cytoplasmic	210	276	0.87
Transmembrane Helix	277	298	0.95
Non-Cytoplasmic	299	315	0.93
Transmembrane Helix	316	338	0.89
Cytoplasmic	339	379	0.96
Transmembrane Helix	380	399	0.95
Non-Cytoplasmic	400	405	0.71
Transmembrane Helix	406	426	0.87
Cytoplasmic	427	436	0.90
Transmembrane Helix	437	462	0.86
Non-Cytoplasmic	463	476	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQNHQTVLA VDMPQTGGSK YLDDDGKNKR TGSVWTASAH IITAVIGSGV LSLAWATAQL  60
   61 GWLAGPVVML LFSAVTYFTS SLLAACYRSG DPISGKRNYT YMDAVRSNLG GVKVTLCGIV 120
  121 QYLNIFGVAI GYTIASAISM MAIKRSNCFH KSGGKDPCHM NSNPYMIAFG LVQILFSQIP 180
  181 DFDQLWWLSI LAAVMSFTYS SAGLALGIAQ VVVNGKVKGS LTGISIGAVT ETQKIWRTFQ 240
  241 ALGDIAFAYS YSIILIEIQD TVKSPPSEEK TMKKATLVSV SVTTMFYMLC GCMGYAAFGD 300
  301 LSPGNLLTGF GFYNPYWLLD IANAAIVIHL IGAYQVYCQP LFAFIEKQAS IQFPDSEFIA 360
  361 KDIKIPIPGF KPLRLNVFRL IWRTVFVIIT TVISMLLPFF NDVVGLLGAL GFWPLTVYFP 420
  421 VEMYIAQKKI PRWSTRWVCL QVFSLGCLVV SIAAAAGSIA GVLLDLKSYK PFRSEY