YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15240832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFALIPDGP ESEENVTRIL KVAWVTVPLG IAITIAACIF VLWWQNLSYS DPYAQAIWIH  60
   61 GFACVLELMA EPLYILSQTL LKLQLRLIVE TVATLARCVT LYSLLVMQTN MEKVIIFALS 120
  121 QVAYGGSLFI GYWAYFLICG VYRSSNLFPF RPGNFMDFDN DLSKMCKLFT FQSFRKLILQ 180
  181 EVLKTPGSLV VRMVFLPFEE SSYTIFARFA SGDYQERNKK LGIYLTVALK LVILIGLIFM 240
  241 AFGPSYSYSL IRLLYGEKWS DGEASLALQF YCLYIIVLAM NGTSEAFLHA VGTKNELERS 300
  301 NDMLLIFSLI YVALNILLIR SAGAIGLIMA NSLSWQILIL SSIITLISEK TILDRKNFWE 360
  361 TFPLHFGIGV ICFCLSAIVI YRRERVFIKR IKRFRDYNHD D

Type	Start	End	Confidence
Cytoplasmic	1	21	0.96
Transmembrane Helix	22	44	0.93
Non-Cytoplasmic	45	55	0.87
Transmembrane Helix	56	76	0.93
Cytoplasmic	77	86	0.81
Transmembrane Helix	87	106	0.90
Non-Cytoplasmic	107	116	0.75
Transmembrane Helix	117	141	0.80
Cytoplasmic	142	225	0.93
Transmembrane Helix	226	246	0.90
Non-Cytoplasmic	247	266	0.87
Transmembrane Helix	267	291	0.81
Cytoplasmic	292	303	0.88
Transmembrane Helix	304	328	0.85
Non-Cytoplasmic	329	361	0.76
Transmembrane Helix	362	382	0.93
Cytoplasmic	383	401	0.81