YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	56	0.90
Non-Cytoplasmic	57	67	0.75
Transmembrane Helix	68	87	0.90
Cytoplasmic	88	97	0.66
Transmembrane Helix	98	121	0.69
Non-Cytoplasmic	122	162	0.45
Transmembrane Helix	163	184	0.84
Cytoplasmic	185	192	0.34
Transmembrane Helix	193	214	0.88
Non-Cytoplasmic	215	232	0.48
Transmembrane Helix	233	253	0.73
Cytoplasmic	254	274	0.65
Transmembrane Helix	275	298	0.84
Non-Cytoplasmic	299	329	0.71
Transmembrane Helix	330	353	0.87
Cytoplasmic	354	384	0.85
Transmembrane Helix	385	407	0.89
Non-Cytoplasmic	408	412	0.61
Transmembrane Helix	413	435	0.86
Cytoplasmic	436	450	0.79
Transmembrane Helix	451	473	0.89
Non-Cytoplasmic	474	482	0.71
Transmembrane Helix	483	502	0.93
Cytoplasmic	503	516	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGGDQSFV PVMDSGQVRL KELGYKQELK RDLSVFSNFA ISFSIISVLT GITTTYNTGL  60
   61 RFGGTVTLVY GWFLAGSFTM CVGLSMAEIC SSYPTSGGLY YWSAMLAGPR WAPLASWMTG 120
  121 WFNIVGQWAV TASVDFSLAQ LIQVIVLLST GGRNGGGYKG SDFVVIGIHG GILFIHALLN 180
  181 SLPISVLSFI GQLAALWNLL GVLVLMILIP LVSTERATTK FVFTNFNTDN GLGITSYAYI 240
  241 FVLGLLMSQY TITGYDASAH MTEETVDADK NGPRGIISAI GISILFGWGY ILGISYAVTD 300
  301 IPSLLSETNN SGGYAIAEIF YLAFKNRFGS GTGGIVCLGV VAVAVFFCGM SSVTSNSRMA 360
  361 YAFSRDGAMP MSPLWHKVNS REVPINAVWL SALISFCMAL TSLGSIVAFQ AMVSIATIGL 420
  421 YIAYAIPIIL RVTLARNTFV PGPFSLGKYG MVVGWVAVLW VVTISVLFSL PVAYPITAET 480
  481 LNYTPVAVAG LVAITLSYWL FSARHWFTGP ISNILS